PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g14150

Common Name

GSCOC_T00013816001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

VOZ

Protein Properties

Length: 355aa MW: 39347.4 Da PI: 5.927

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g14150	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	420.2	3.4e-129	54	273	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 ppp+aflgpkcalwdc+rpaqgsew+ qdycs +hat+a eg pg++pvlrp+gi+lkd+llfaalsak+qgk+vgipecegaat+kspwna+el Cc02_g14150 54 PPPAAFLGPKCALWDCPRPAQGSEWCqtsQDYCSGYHATIAPAEGYPGMAPVLRPGGIGLKDNLLFAALSAKAQGKDVGIPECEGAATTKSPWNAPEL 151 89*********************944459*************************************************************** PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdek 193 fdl +lege irewlffdkprrafesgnrkqrslpdy+grgwhes kqvm+e+gglkrsyymdpqp++++ewhlyeyein++d +alyrlelklvd+k Cc02_g14150 152 FDLVVLEGEMIREWLFFDKPRRAFESGNRKQRSLPDYTGRGWHESGKQVMNEYGGLKRSYYMDPQPMKNYEWHLYEYEINKYDVCALYRLELKLVDGK 249 ********************************************************************************************** PP VOZ 194 ksakgkvskdsladlqkklgrlta 217 ks+kgk+++ds++dlqk++ +lta Cc02_g14150 250 KSPKGKIATDSVTDLQKQMKKLTA 273 ********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MGVNNLGLPT QLEYHTFDLH QDFENQYFQG FDGTGLCGED ALPQIAGFVQ NFCPPPAAFL 60 GPKCALWDCP RPAQGSEWCQ TSQDYCSGYH ATIAPAEGYP GMAPVLRPGG IGLKDNLLFA 120 ALSAKAQGKD VGIPECEGAA TTKSPWNAPE LFDLVVLEGE MIREWLFFDK PRRAFESGNR 180 KQRSLPDYTG RGWHESGKQV MNEYGGLKRS YYMDPQPMKN YEWHLYEYEI NKYDVCALYR 240 LELKLVDGKK SPKGKIATDS VTDLQKQMKK LTAEFPSDKQ RAIKGGAKAA SKDAAGSIYS 300 TPNRMPPTGE GFEYSTGASY EYLVDNLNGY YHCHFTSYIS MSWALSSSGL LSTL*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MGVNNLGLPT QLEYHTFDLH QDFENQYFQG FDGTGLCGED ALPQIAGFVQ NFCPPPAAFL  60
GPKCALWDCP RPAQGSEWCQ TSQDYCSGYH ATIAPAEGYP GMAPVLRPGG IGLKDNLLFA  120
ALSAKAQGKD VGIPECEGAA TTKSPWNAPE LFDLVVLEGE MIREWLFFDK PRRAFESGNR  180
KQRSLPDYTG RGWHESGKQV MNEYGGLKRS YYMDPQPMKN YEWHLYEYEI NKYDVCALYR  240
LELKLVDGKK SPKGKIATDS VTDLQKQMKK LTAEFPSDKQ RAIKGGAKAA SKDAAGSIYS  300
TPNRMPPTGE GFEYSTGASY EYLVDNLNGY YHCHFTSYIS MSWALSSSGL LSTL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105411.1	0.0	transcription factor VOZ1-like
Swissprot	Q9SGQ0	1e-148	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A068TKM7	0.0	A0A068TKM7_COFCA; Uncharacterized protein
STRING	XP_009776508.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2818	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-144	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]