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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cc02_g14010 |
| Common Name | GSCOC_T00029069001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
NAC |
| Protein Properties |
Length: 302aa MW: 34096.2 Da PI: 9.1804 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc02_g14010 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.7 | 1.1e-53 | 7 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98
lppGfrFhPtdeel+++yLk+kv++ +++l ++i+e+d+yk++PwdLp k+ +e+ew+fFs+rd+ky++g r+nr+++sgyWkatg+dk++ls ++
Cc02_g14010 7 LPPGFRFHPTDEELINYYLKNKVSSATNPLVSIIAEIDLYKFNPWDLPDKALFGESEWFFFSPRDRKYPNGARPNRSAASGYWKATGTDKPILSYASQ 104
79****************************999***************7777899******************************************* PP
NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128
+g+kk Lvfykgrap+g+kt+W+mheyrl
Cc02_g14010 105 CIGVKKALVFYKGRAPNGTKTNWMMHEYRL 134
****************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MEGINVLPPG FRFHPTDEEL INYYLKNKVS SATNPLVSII AEIDLYKFNP WDLPDKALFG 60
ESEWFFFSPR DRKYPNGARP NRSAASGYWK ATGTDKPILS YASQCIGVKK ALVFYKGRAP 120
NGTKTNWMMH EYRLLNDSHH SLVQKGSMRL DDWVLCRVRQ KSNNSIEPRE GNAKSRSKRT 180
FPCGFDAYGE GEIAQNISYF GNNHWHPQQN SDRLIPYGHL DIQGGTSSDQ SSSQENFEPS 240
QVNINMNHSM KDALESIKRV LSLGNLDEQG SKLPNKRLRS SLTPSSTYLE NSGIFVIPNN 300
P*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-70 | 7 | 165 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-70 | 7 | 165 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-70 | 7 | 165 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-70 | 7 | 165 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-70 | 7 | 165 | 20 | 172 | NAC domain-containing protein 19 |
| 3swm_B | 5e-70 | 7 | 165 | 20 | 172 | NAC domain-containing protein 19 |
| 3swm_C | 5e-70 | 7 | 165 | 20 | 172 | NAC domain-containing protein 19 |
| 3swm_D | 5e-70 | 7 | 165 | 20 | 172 | NAC domain-containing protein 19 |
| 3swp_A | 5e-70 | 7 | 165 | 20 | 172 | NAC domain-containing protein 19 |
| 3swp_B | 5e-70 | 7 | 165 | 20 | 172 | NAC domain-containing protein 19 |
| 3swp_C | 5e-70 | 7 | 165 | 20 | 172 | NAC domain-containing protein 19 |
| 3swp_D | 5e-70 | 7 | 165 | 20 | 172 | NAC domain-containing protein 19 |
| 4dul_A | 5e-70 | 7 | 165 | 17 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 5e-70 | 7 | 165 | 17 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}. |
| UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
