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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cc02_g14000 |
| Common Name | GSCOC_T00029070001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
HD-ZIP |
| Protein Properties |
Length: 179aa MW: 20636.1 Da PI: 8.2663 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc02_g14000 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.9 | 9.8e-20 | 19 | 72 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
+ ++t++q+ Le+ F+ n++++ ++r +LA++lgL+ r+V +W+qN+Ra++k+
Cc02_g14000 19 KKRLTQDQVSLLEKSFNFNNKLDPDRRSQLAHELGLPPRKVAIWYQNKRARWKN 72
5679************************************************95 PP
|
| 2 | HD-ZIP_I/II | 106.1 | 2.8e-34 | 18 | 109 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+k+rl+++qv+lLE+sF+ ++kL+p+r+++la+eLgl pr+va+W+qn+RAR+k+ +lE+d++aL+ ++++l ++nerL++eve+L++el++
Cc02_g14000 18 HKKRLTQDQVSLLEKSFNFNNKLDPDRRSQLAHELGLPPRKVAIWYQNKRARWKNENLEVDHKALQLRLENLLADNERLQSEVERLKQELHK 109
69**************************************************************************************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009646 | Biological Process | response to absence of light |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 179 aa
Download sequence Send
to blast |
MDYHHIQSSV RKNELKFHKK RLTQDQVSLL EKSFNFNNKL DPDRRSQLAH ELGLPPRKVA 60
IWYQNKRARW KNENLEVDHK ALQLRLENLL ADNERLQSEV ERLKQELHKA QEMLLSVNNT 120
PYSSLSSQIS SSCDEVGSSS LVHGSRNHLD KDFFACLIGG EGQFGNTNDQ EFFRSSIS*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 10 | 20 | RKNELKFHKKR |
