PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g13910

Common Name

GSCOC_T00029080001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 315aa MW: 35089.4 Da PI: 8.2393

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g13910	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.6	1.2e-32	65	208	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksg 81 lp+G++F+P+d+e++ e+L+++v ++ ++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ + Cc02_g13910 65 LPAGVKFDPSDQEIL-EHLEARVLLDSrkihplIDEFIpTIEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKvhtdteadgGGET 160 799*********9.899999887774565443332333665557******.666777788**************75666554443377 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v+ +g+l+g kk+Lv+y gr++k+ekt+Wvmh+y+l Cc02_g13910 161 RWHKTGKTRPVFI-SGALKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 208 8********.999*******66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-38	56	227	IPR003441	NAC domain
PROSITE profile	PS51005	33.172	65	227	IPR003441	NAC domain
Pfam	PF02365	7.0E-14	66	208	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MTWCSNESNQ ENLPLQIVPA QISHEKSTTV LNSKLNEVKT IACPSCGHPL EVQDQTGLLQ 60 DLPGLPAGVK FDPSDQEILE HLEARVLLDS RKIHPLIDEF IPTIEGENGI CYTHPEKLPG 120 VNKDGQIRHF FHRPSKAYTT GTRKRRKVHT DTEADGGGET RWHKTGKTRP VFISGALKGY 180 KKILVLYTNY GRQRKPEKTN WVMHQYHLGT NEEEKDGELV VSKVFYQTQP RQCGGSSSIS 240 ELDKRSTSSV SQSHLMKSTS NNFIDYYPHP YNISYNLGSQ SGDSHSSSQL IPNLVVHGDG 300 SSFIHLPSSV SKGK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027162143.1	0.0	NAC domain-containing protein 73 isoform X1
Refseq	XP_027162144.1	0.0	NAC domain-containing protein 73 isoform X1
Refseq	XP_027162145.1	0.0	NAC domain-containing protein 73 isoform X1
Refseq	XP_027162442.1	0.0	NAC domain-containing protein 73-like isoform X1
Swissprot	O49459	1e-120	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A068TT98	0.0	A0A068TT98_COFCA; Uncharacterized protein
STRING	POPTR_0004s04900.1	1e-147	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-122	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]