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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g13910 | ||||||||
Common Name | GSCOC_T00029080001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 35089.4 Da PI: 8.2393 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.6 | 1.2e-32 | 65 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksg 81 lp+G++F+P+d+e++ e+L+++v ++ ++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ + Cc02_g13910 65 LPAGVKFDPSDQEIL-EHLEARVLLDSrkihplIDEFIpTIEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKvhtdteadgGGET 160 799***********9.899999887774565443332333665557**********.666777788******************75666554443377 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v+ +g+l+g kk+Lv+y gr++k+ekt+Wvmh+y+l Cc02_g13910 161 RWHKTGKTRPVFI-SGALKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 208 8************.999***********66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-38 | 56 | 227 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.172 | 65 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-14 | 66 | 208 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MTWCSNESNQ ENLPLQIVPA QISHEKSTTV LNSKLNEVKT IACPSCGHPL EVQDQTGLLQ 60 DLPGLPAGVK FDPSDQEILE HLEARVLLDS RKIHPLIDEF IPTIEGENGI CYTHPEKLPG 120 VNKDGQIRHF FHRPSKAYTT GTRKRRKVHT DTEADGGGET RWHKTGKTRP VFISGALKGY 180 KKILVLYTNY GRQRKPEKTN WVMHQYHLGT NEEEKDGELV VSKVFYQTQP RQCGGSSSIS 240 ELDKRSTSSV SQSHLMKSTS NNFIDYYPHP YNISYNLGSQ SGDSHSSSQL IPNLVVHGDG 300 SSFIHLPSSV SKGK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027162143.1 | 0.0 | NAC domain-containing protein 73 isoform X1 | ||||
Refseq | XP_027162144.1 | 0.0 | NAC domain-containing protein 73 isoform X1 | ||||
Refseq | XP_027162145.1 | 0.0 | NAC domain-containing protein 73 isoform X1 | ||||
Refseq | XP_027162442.1 | 0.0 | NAC domain-containing protein 73-like isoform X1 | ||||
Swissprot | O49459 | 1e-120 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A068TT98 | 0.0 | A0A068TT98_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0004s04900.1 | 1e-147 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-122 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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