PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g12530
Common NameGSCOC_T00029271001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 841aa    MW: 92494.4 Da    PI: 8.5564
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g12530genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.1e-19338437198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++lv+
  Cc02_g12530 338 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDLKGKEWVFQFRFwpNNNSRMYVLE-GITPCIQSMQLQAGDVVTFSRIE-PEGKLVM 433
                  89**************************555566778***************9989999999***9.********************887.5665666 PP

                  EEE- CS
           B3  95 kvfr 98 
                  + ++
  Cc02_g12530 434 GCRK 437
                  5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-31334443IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-20335439IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-22336437No hitNo description
PROSITE profilePS5086311.11338439IPR003340B3 DNA binding domain
SMARTSM010199.1E-22338438IPR003340B3 DNA binding domain
PfamPF023623.1E-16338437IPR003340B3 DNA binding domain
PROSITE profilePS5105013.077603653IPR011124Zinc finger, CW-type
PfamPF074965.1E-10608650IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAASAAASTA SLAKVCFNSN CKETLERPRK GWRRRTGEFA DLCDRCASAY EDGKFCESFH  60
LDASGWRCCE SCGKQIHCGC IVSFHMFVLL DAGGIECITC ARKSFILTPN PAWPPPSLFL  120
PLQPERIKDI SVKNWSPIAG SGPVPWRQAP SLFNGSAIQS ELQPRVPTPI EFDVSGGVDR  180
LQLNERLSSS LEKKKKEESF ERLMNGSLRI CSSEFGSGTF GAMGKEQSFP FSNASPETGY  240
PSTSDFSVAT APALENGSNN HTKVSGTLIQ QTTQPTPSEK RPCGHNPADS SEGQPRNGRA  300
RPEVRARSQL LPRYWPRITD QELQQISGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA  360
EAYFPPISQP EGLPLKVQDL KGKEWVFQFR FWPNNNSRMY VLEGITPCIQ SMQLQAGDVV  420
TFSRIEPEGK LVMGCRKASC APSDQGNEAS NAGQGYSSNG DVAPKSNKAG EITKPGELVS  480
TNSRMKGYSA SSSCPSLNRA AAKSGSSWPE HDKPVHVAKV VEAKPAVRSK RKNSTLGLKS  540
KRLRIENEDM LELKVTWEQV QGLLRPPPNK APSVFVIEGC EIEEYEQDAP VIGRPTIPGT  600
DHQGKKIQWA QCEECSKWRK IPADALLPSK WTCSKNLWDP ERSLCSTVQE LSMEKLQDLL  660
PAISKTASKK KIRAPKQDPD SVEALEGLDA LANLAIQEKS GSFQASQATT KHPRHKAGCS  720
CIVCIQPPSG KGPKHKQPCD CIVCKSLKRR HKTMMLKKEK NLTEKIPETS DQMLSMQELP  780
EQVPNGLVNK SPKEEMCSAL PFKGQIDLNI QPEKEEELSP SFCSGNIPRS MLETRERHNR  840
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-663164462132B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105173.10.0B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A068TUI90.0A0A068TUI9_COFCA; Uncharacterized protein
STRINGXP_009616960.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-147HSI2-like 1