PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g12530 | ||||||||
Common Name | GSCOC_T00029271001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | B3 | ||||||||
Protein Properties | Length: 841aa MW: 92494.4 Da PI: 8.5564 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.7 | 5.1e-19 | 338 | 437 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++lv+ Cc02_g12530 338 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDLKGKEWVFQFRFwpNNNSRMYVLE-GITPCIQSMQLQAGDVVTFSRIE-PEGKLVM 433 89**************************555566778***************9989999999***9.********************887.5665666 PP EEE- CS B3 95 kvfr 98 + ++ Cc02_g12530 434 GCRK 437 5554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-31 | 334 | 443 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.66E-20 | 335 | 439 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-22 | 336 | 437 | No hit | No description |
PROSITE profile | PS50863 | 11.11 | 338 | 439 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.1E-22 | 338 | 438 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-16 | 338 | 437 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.077 | 603 | 653 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 5.1E-10 | 608 | 650 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MAASAAASTA SLAKVCFNSN CKETLERPRK GWRRRTGEFA DLCDRCASAY EDGKFCESFH 60 LDASGWRCCE SCGKQIHCGC IVSFHMFVLL DAGGIECITC ARKSFILTPN PAWPPPSLFL 120 PLQPERIKDI SVKNWSPIAG SGPVPWRQAP SLFNGSAIQS ELQPRVPTPI EFDVSGGVDR 180 LQLNERLSSS LEKKKKEESF ERLMNGSLRI CSSEFGSGTF GAMGKEQSFP FSNASPETGY 240 PSTSDFSVAT APALENGSNN HTKVSGTLIQ QTTQPTPSEK RPCGHNPADS SEGQPRNGRA 300 RPEVRARSQL LPRYWPRITD QELQQISGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA 360 EAYFPPISQP EGLPLKVQDL KGKEWVFQFR FWPNNNSRMY VLEGITPCIQ SMQLQAGDVV 420 TFSRIEPEGK LVMGCRKASC APSDQGNEAS NAGQGYSSNG DVAPKSNKAG EITKPGELVS 480 TNSRMKGYSA SSSCPSLNRA AAKSGSSWPE HDKPVHVAKV VEAKPAVRSK RKNSTLGLKS 540 KRLRIENEDM LELKVTWEQV QGLLRPPPNK APSVFVIEGC EIEEYEQDAP VIGRPTIPGT 600 DHQGKKIQWA QCEECSKWRK IPADALLPSK WTCSKNLWDP ERSLCSTVQE LSMEKLQDLL 660 PAISKTASKK KIRAPKQDPD SVEALEGLDA LANLAIQEKS GSFQASQATT KHPRHKAGCS 720 CIVCIQPPSG KGPKHKQPCD CIVCKSLKRR HKTMMLKKEK NLTEKIPETS DQMLSMQELP 780 EQVPNGLVNK SPKEEMCSAL PFKGQIDLNI QPEKEEELSP SFCSGNIPRS MLETRERHNR 840 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-66 | 316 | 446 | 2 | 132 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105173.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A068TUI9 | 0.0 | A0A068TUI9_COFCA; Uncharacterized protein | ||||
STRING | XP_009616960.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7128 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-147 | HSI2-like 1 |