PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g11560
Common NameGSCOC_T00029397001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 712aa    MW: 77817.3 Da    PI: 6.0315
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g11560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.6e-204398156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Cc02_g11560 43 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 98
                 688999***********************************************998 PP
2START219.61.1e-682314511206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++elv++a+a+ep+Wv s     e + +de++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a tlev+
  Cc02_g11560 231 ELAVAAMEELVRMAQAGEPLWVPSGdnstETLSEDEYVRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWSNVFSsivsRALTLEVL 327
                  57899******************9999999999**********999********************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      galq+m+ae+q+++plvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ +    v R++++pSg+li++++ng+skv wvehv+ ++r 
  Cc02_g11560 328 STGvagnynGALQVMTAEFQVPTPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPTS----VSRCRRRPSGCLIQELPNGYSKVMWVEHVEIDDRA 421
                  ********************************************************975....8********************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h+++r lv+sgla+gak+wvatl+rqce+
  Cc02_g11560 422 VHSIYRALVNSGLAFGAKRWVATLDRQCER 451
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-212794IPR009057Homeodomain-like
SuperFamilySSF466894.18E-1928100IPR009057Homeodomain-like
PROSITE profilePS5007116.56840100IPR001356Homeobox domain
SMARTSM003892.2E-1841104IPR001356Homeobox domain
PfamPF000462.0E-174398IPR001356Homeobox domain
CDDcd000864.49E-1843101No hitNo description
PROSITE profilePS5084846.926222454IPR002913START domain
SuperFamilySSF559611.1E-37222453No hitNo description
CDDcd088754.38E-131226450No hitNo description
SMARTSM002342.2E-69231451IPR002913START domain
PfamPF018525.9E-57232451IPR002913START domain
Gene3DG3DSA:3.30.530.207.3E-6328451IPR023393START-like domain
SuperFamilySSF559611.43E-24470703No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MTHKTPENEM DMIRDDEFES KSGTDIMEAA SGDDQDPNQR PKKKRYHRHT QHQIQEMESF  60
FKECPHPDDK QRKELGRRLG LEPLQVKFWF QNKRTQMKAQ HERHENTQLR TENEKLRAEN  120
IRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISGIAA KYVGKPMLSY  180
PHLPPGASRS LDLGVGNYGA QSGMIGEIYG AGDLLRSVSG PTEADKPMVI ELAVAAMEEL  240
VRMAQAGEPL WVPSGDNSTE TLSEDEYVRT FPRGIGPKPL GLKSEASRES AVVIMNHINL  300
VEILMDVNQW SNVFSSIVSR ALTLEVLSTG VAGNYNGALQ VMTAEFQVPT PLVPTRENYF  360
VRYCKQHADG TWAVVDVSLD NLRPTSVSRC RRRPSGCLIQ ELPNGYSKVM WVEHVEIDDR  420
AVHSIYRALV NSGLAFGAKR WVATLDRQCE RLASAMANNI PAGDVGVITT PEGRKSMLKL  480
AERMVMSFCA GVGASTAHTW TTLSGSGADD VRVMTRKSMD DPGRPPGIVL SAATSFWLPV  540
LPKRVFDFLR DENSRSEWDI LSNGGLVQEM AHIANGRDPG NSVSLLRVNS ANSSQSNMLI  600
LQESSTDSTG SYVIYAPVDI VAMNVVLSGG DPDYVALLPS GFAILPDGPM NQGGAGISEV  660
GSGGTLLTVA FQILVDSVPT AKLSLGSVAT VNSLIKCTVE RIKAALSCDK A*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105031.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_027105032.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_027111570.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_027111571.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_027159776.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_027159777.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A068TU250.0A0A068TU25_COFCA; Uncharacterized protein
STRINGXP_009799795.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]