PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g11290
Common NameGSCOC_T00029429001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 342aa    MW: 36809.3 Da    PI: 6.6182
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g11290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17245278134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Cc02_g11290 245 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 278
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.5E-714331IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.543239275IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-16239289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-15243276IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-15243302No hitNo description
CDDcd002021.18E-13244291No hitNo description
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15245278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGPNFVDEID CGSFFDHIDD LIEFPPENEC GNGLVGSGDC KNFPSLWDEA LPDTDTLFTG  60
NTSNSASDLS AELSVPYEDI VQLEWLSTFV EDSFSGGGMT LSKDNSSVNK DNPCNQFQTS  120
SPVSVLESSS SSSSSSCSGG KTIPLSPNHR GPQRARSKRP RPATFNPRPA IQLISPPASF  180
SEAPHLFLAP GVSSESENFA ESEFVRKFPK PAGGEHKKKK KIKLTVPLGP MEINQNSAPQ  240
AVRKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FVPSLHSNSH  300
KKVLEMRGKV VEENTTAGTA AKASAAGREL VPESKPSLEY I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157161KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027158950.10.0GATA transcription factor 8-like
RefseqXP_027158951.10.0GATA transcription factor 8-like
TrEMBLA0A068TWN20.0A0A068TWN2_COFCA; GATA transcription factor
STRINGXP_009760862.11e-154(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-40GATA family protein