PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g10630
Common NameGSCOC_T00029508001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 583aa    MW: 64881 Da    PI: 4.3666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g10630genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.2e-5491361128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv +yL++k+ gk+++l ++i+e+diyk+ePw+Lp k ++k+++ ewyfFs  dkky +g+r+nrat++gyWk+tgkd++v + k
  Cc02_g10630   9 LAPGFRFHPTDEELVRYYLRRKLCGKPFRL-DAISEIDIYKAEPWELPgKsRLKTRDLEWYFFSVLDKKYGNGSRTNRATEEGYWKTTGKDRPVRH-K 104
                  579***************************.99***************6347777888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++vg+kktLv+++grapkg++t+Wvmheyrl
  Cc02_g10630 105 SQVVGMKKTLVYHSGRAPKGQRTNWVMHEYRL 136
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-643159IPR003441NAC domain
PROSITE profilePS5100559.0459159IPR003441NAC domain
PfamPF023651.3E-2711136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MFSKTSTSLA PGFRFHPTDE ELVRYYLRRK LCGKPFRLDA ISEIDIYKAE PWELPGKSRL  60
KTRDLEWYFF SVLDKKYGNG SRTNRATEEG YWKTTGKDRP VRHKSQVVGM KKTLVYHSGR  120
APKGQRTNWV MHEYRLIDEE LEKAGIVQDA FVLCRVFQKS GSGPKNGEQY GAPFVEEEWE  180
EDELEMVPKE EAAEEAEVGD DSYWDGIDLD QILGTEISPD NDHMSLNVVA GENVASVEEN  240
TDSSNDPQKL LVSNLPLEFY SGENIRGGEE TTGSNNDSQN HLVGAGEYNC VPEQSDDQNS  300
YNLPVHYDLH QKAVKREYIG EPSNALDAEN VNYLLDEPYM DALDNLQFDD GAFLETNDLS  360
NPIAADTSAF GMLEEYLNFY DADGEIPPYM NHDLPEMMGI NETLVSGQAS ILPKESEEKA  420
QSAEESSEKL LGRGDVASSS KEEPTKEYFQ YPFIKQASRM LGSIPAPPAF ASEFPSEDAT  480
LLLDPSSSST AHVTAGMIQI GNIGPGSHGM DWLFGKHGRY NVVLSFGLSR GDDNSTTLES  540
VVSIRPGKAA ASGMSRGWFC FIFFWVLILS VGFKIGTCIC AR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-50516513171NO APICAL MERISTEM PROTEIN
1ut4_B2e-50516513171NO APICAL MERISTEM PROTEIN
1ut7_A2e-50516513171NO APICAL MERISTEM PROTEIN
1ut7_B2e-50516513171NO APICAL MERISTEM PROTEIN
3swm_A2e-50516516174NAC domain-containing protein 19
3swm_B2e-50516516174NAC domain-containing protein 19
3swm_C2e-50516516174NAC domain-containing protein 19
3swm_D2e-50516516174NAC domain-containing protein 19
3swp_A2e-50516516174NAC domain-containing protein 19
3swp_B2e-50516516174NAC domain-containing protein 19
3swp_C2e-50516516174NAC domain-containing protein 19
3swp_D2e-50516516174NAC domain-containing protein 19
4dul_A2e-50516513171NAC domain-containing protein 19
4dul_B2e-50516513171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104902.10.0NAC domain-containing protein 78-like
TrEMBLA0A068TV210.0A0A068TV21_COFCA; Uncharacterized protein
STRINGXP_009599412.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-136NAC domain containing protein 2