PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g08940 | ||||||||
Common Name | GSCOC_T00029726001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 28856.4 Da PI: 8.8747 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv v+ +G ++W++ ++ g+ R++k+c++rw +yl Cc02_g08940 14 KGPWTPEEDQILVSFVQHYGHENWRALPKQAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 6.1e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++ +G++ W++Ia++++ gRt++++k++w+++l Cc02_g08940 67 RGNFSKEEEESIIKLHQIMGNR-WSAIANRLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.329 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.06E-31 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.51E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.122 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.25E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MVRVPCCEKM GLKKGPWTPE EDQILVSFVQ HYGHENWRAL PKQAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF SKEEEESIIK LHQIMGNRWS AIANRLPGRT DNEIKNYWNT HLKKRVHQDA 120 VGQKDLRQLQ TNLWRSNSQG TPESGEASNH PGSEGNGDVQ NFTGSIHENF SSLDYSISAP 180 GPARVLAETN LKQSAKDSSK TNKYLGPASD SRLQFLSTGE SNIEPGEDSI KEDMVFWYNL 240 LLIAGKSQEK FAQIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU164537 | 0.0 | EU164537.1 Coffea canephora BAC 41C02, genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104654.1 | 0.0 | transcription factor MYB15-like isoform X1 | ||||
Refseq | XP_027111207.1 | 0.0 | transcription factor MYB15-like isoform X1 | ||||
TrEMBL | A0A068TX92 | 0.0 | A0A068TX92_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_013493m | 2e-78 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-73 | myb domain protein 15 |