PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 725aa MW: 81429.1 Da PI: 6.5975

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g07650	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	390.1	2.4e-119	351	721	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+a++++d + a+++L+++++++sp+gd mqRla+yf+ +L+ar+a+s++++ykal + +ts +++l+a++l+ ++P+ k+s++ Cc02_g07650 351 LRTLLTLCAQAIAADDRRTANEFLKQIRQHCSPTGDGMQRLAKYFADGLEARMAGSGTQIYKALITMPTS---AADVLKAYQLYLAACPFRKISNFFS 445 5789**********************************************************999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I a+e+ +++HiiDf+i +G+QWp+L+q L+sR++gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfef + +a+++e++++e+L Cc02_g07650 446 NKTIWHAAEKGSTLHIIDFGILYGFQWPCLIQRLSSRSGGPPKLRITGIDLPHPGfrPAERVEETGRRLANYAETFKVPFEFVA-IAQKWETVRIEDL 542 *************************************************9999***********************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+laVn+ +++ +llde+v ++s+r+ vL+l+++++P+v+v+ + +n++ F++rf eal +ys++fd+lea++pre +er+ +E+ ++gr Cc02_g07650 543 KIREDEVLAVNCLYRMRNLLDETVVVNSPRNIVLNLIRKMKPDVFVLGIVNGAYNAPFFVTRFREALFHYSSFFDMLEANVPREIHERMLLEKTIFGR 640 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+ace aer+er et+++W r +aGF+++pl+e+++ ak +++d + ++e+s++l++gWk+r L+++S+W+ Cc02_g07650 641 EAMNVIACEAAERVERPETYKQWLVRNLRAGFRQLPLNEDIMRMAKERAVSYDKD-FVIDEDSQWLLQGWKGRILYALSSWT 721 ************************************************977.***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.914	325	702	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.3E-117	351	721	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MVMDGNSRVG YGTTSGIELN DEGVSVVPNP NLIGSLRLDG NVVERNYASR LSVQSHLYPN 60 VFVPLSSGDS NEDYDFSDAV LKYINDMLME EEMEDKGCMF QESAALQAAE KSFYDVLGEK 120 YPPPDHQVPS SNLRVSSREE SYPGGYGGLI WCPSWNNDTS GSDSTYVQHF SPYSSSNSSG 180 TVADGHIDSP DSILRISDIF SDSQSAMQFK KGVEEASKFL PNGNALLVDS QENGLLDKVQ 240 KKWPMTVKVE RSENGYSPDE SRGKKNPLHE DLQQQGGRSN KQSAVFTEST VRSDLFDKVL 300 LCSEGRNESD LRKALQDMAV KNVPQNNKLK GSSGGKSRSK KQGAKRNVVD LRTLLTLCAQ 360 AIAADDRRTA NEFLKQIRQH CSPTGDGMQR LAKYFADGLE ARMAGSGTQI YKALITMPTS 420 AADVLKAYQL YLAACPFRKI SNFFSNKTIW HAAEKGSTLH IIDFGILYGF QWPCLIQRLS 480 SRSGGPPKLR ITGIDLPHPG FRPAERVEET GRRLANYAET FKVPFEFVAI AQKWETVRIE 540 DLKIREDEVL AVNCLYRMRN LLDETVVVNS PRNIVLNLIR KMKPDVFVLG IVNGAYNAPF 600 FVTRFREALF HYSSFFDMLE ANVPREIHER MLLEKTIFGR EAMNVIACEA AERVERPETY 660 KQWLVRNLRA GFRQLPLNED IMRMAKERAV SYDKDFVIDE DSQWLLQGWK GRILYALSSW 720 TPAD*

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MVMDGNSRVG YGTTSGIELN DEGVSVVPNP NLIGSLRLDG NVVERNYASR LSVQSHLYPN  60
VFVPLSSGDS NEDYDFSDAV LKYINDMLME EEMEDKGCMF QESAALQAAE KSFYDVLGEK  120
YPPPDHQVPS SNLRVSSREE SYPGGYGGLI WCPSWNNDTS GSDSTYVQHF SPYSSSNSSG  180
TVADGHIDSP DSILRISDIF SDSQSAMQFK KGVEEASKFL PNGNALLVDS QENGLLDKVQ  240
KKWPMTVKVE RSENGYSPDE SRGKKNPLHE DLQQQGGRSN KQSAVFTEST VRSDLFDKVL  300
LCSEGRNESD LRKALQDMAV KNVPQNNKLK GSSGGKSRSK KQGAKRNVVD LRTLLTLCAQ  360
AIAADDRRTA NEFLKQIRQH CSPTGDGMQR LAKYFADGLE ARMAGSGTQI YKALITMPTS  420
AADVLKAYQL YLAACPFRKI SNFFSNKTIW HAAEKGSTLH IIDFGILYGF QWPCLIQRLS  480
SRSGGPPKLR ITGIDLPHPG FRPAERVEET GRRLANYAET FKVPFEFVAI AQKWETVRIE  540
DLKIREDEVL AVNCLYRMRN LLDETVVVNS PRNIVLNLIR KMKPDVFVLG IVNGAYNAPF  600
FVTRFREALF HYSSFFDMLE ANVPREIHER MLLEKTIFGR EAMNVIACEA AERVERPETY  660
KQWLVRNLRA GFRQLPLNED IMRMAKERAV SYDKDFVIDE DSQWLLQGWK GRILYALSSW  720
TPAD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-55	358	722	26	380	Protein SCARECROW
5b3h_A	7e-55	358	722	25	379	Protein SCARECROW
5b3h_D	7e-55	358	722	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027163454.1	0.0	scarecrow-like protein 14
Refseq	XP_027163455.1	0.0	scarecrow-like protein 14
Refseq	XP_027163456.1	0.0	scarecrow-like protein 14
Refseq	XP_027163457.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A068TVQ0	0.0	A0A068TVQ0_COFCA; Uncharacterized protein
STRING	XP_009611175.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]