PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g07090 | ||||||||
Common Name | GSCOC_T00039268001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 420aa MW: 45469.1 Da PI: 6.1356 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5.1e-17 | 54 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v ++G ++W +Iar ++ gR++k+c++rw + Cc02_g07090 54 RGPWSPEEDAVLTRLVSKFGARNWGLIARGIP-GRSGKSCRLRWCNQ 99 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.6e-17 | 106 | 150 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd++++ a++ +G++ W++Ia+ + gRt++ +k++w++ Cc02_g07090 106 RKPFTDEEDQIIISAHAIHGNK-WASIAKLLS-GRTDNAIKNHWNST 150 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.043 | 49 | 100 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-30 | 51 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-15 | 53 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 54 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 55 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.44E-14 | 56 | 98 | No hit | No description |
PROSITE profile | PS51294 | 25.946 | 101 | 155 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 105 | 153 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 106 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-12 | 108 | 151 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 108 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MTSAPEENGL KVNSAVVDVD QAVVVDGCGD AMEGTTDDTG GGASGSGGRS GRVRGPWSPE 60 EDAVLTRLVS KFGARNWGLI ARGIPGRSGK SCRLRWCNQL DPGVKRKPFT DEEDQIIISA 120 HAIHGNKWAS IAKLLSGRTD NAIKNHWNST LKRRFSSMSQ NEMIQDGSID TLVASSGETM 180 SPGLINSLNS PKEEYISPME EIPRQTEGKD PMNGDQFYSD NCQCNVSERN QHCIGEKNSS 240 NIHRPVARIG AFNIYNPSGS DYALPRTTPM QGPLIRASTP DFGFFTYMEG ELDEPVIPLQ 300 CSHGCCRSSG LGSSLKKSSL LGPEFVEYEE LPPCSGHELA AIATDLNNIA WIKSGLENSL 360 RVPETASGPM VPRTVPVQMN AHEHALQPLH FDKVQHQSRG IMTNVFPAKM PLPTCIFSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-40 | 53 | 157 | 6 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027110879.1 | 0.0 | transcription factor MYB1 | ||||
TrEMBL | A0A068V2F9 | 0.0 | A0A068V2F9_COFCA; Uncharacterized protein | ||||
STRING | XP_009781248.1 | 1e-122 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-90 | myb domain protein 109 |