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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g06210 | ||||||||
Common Name | GSCOC_T00039146001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 19360.1 Da PI: 7.3035 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.3 | 4e-41 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C ++C +apyf +++p+kfa vhk+FGasnv+k+l+++pee+red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l l+k Cc02_g06210 11 SCAACKFLKRRCIPNCQFAPYFRSDEPNKFAKVHKVFGASNVSKILNEVPEEQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQKKMVELQHDLLLAK 108 6********************************************************************************************98887 PP DUF260 99 e 99 + Cc02_g06210 109 A 109 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.586 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-40 | 11 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MKNQEPRSSS SCAACKFLKR RCIPNCQFAP YFRSDEPNKF AKVHKVFGAS NVSKILNEVP 60 EEQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQKKMVEL QHDLLLAKAR LAYCATTKPA 120 PTSAIFLEGP SNVASNIDFP ASAGLELEEA FYHNSSVMGQ NANGWMNELG QFPLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-44 | 6 | 111 | 6 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-44 | 6 | 111 | 6 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104297.1 | 1e-129 | LOB domain-containing protein 21-like | ||||
Refseq | XP_027110763.1 | 1e-129 | LOB domain-containing protein 21-like | ||||
Refseq | XP_027162239.1 | 1e-129 | LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 2e-62 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A068UZL3 | 1e-128 | A0A068UZL3_COFCA; Uncharacterized protein | ||||
STRING | XP_009786680.1 | 6e-78 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 8e-65 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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