PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g06200
Common NameGSCOC_T00039145001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 265aa    MW: 29194.2 Da    PI: 7.8944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g06200genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-1479125354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+h+e+E+rRRdriN  +++Lr+l+Pk+     +K++Ka+ L  +ve++k++
  Cc02_g06200  79 RSHSEAEKRRRDRINAQLATLRKLIPKS-----EKMDKAALLGSVVEHVKEM 125
                  78*************************8.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.55576125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-1377133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-1279125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1579128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.75E-1179126No hitNo description
SMARTSM003532.5E-1282131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048738.69E-4170211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MANCFSSADL QEDAAWKVCH QAAVEQNSMD LPFLAPQLNN NSTPDEASSF NFDGYPFSLH  60
PWSIPAEGFA EGRAASASRS HSEAEKRRRD RINAQLATLR KLIPKSEKMD KAALLGSVVE  120
HVKEMKSKTT EISNCMMIPT DVDEVTVDYV DDEYCSSIAK DRKILLKACV CCDDRPEFFS  180
ELNRALKSLR LTTVEANVIS LGGRIKSSFI LCPISSSVEG GICGNTLKQS LKLVLSRIAA  240
SCTTSTGSNY RIKSRRQRFF LPSH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104296.10.0transcription factor bHLH51-like
RefseqXP_027110762.10.0transcription factor bHLH51-like
TrEMBLA0A068V0E30.0A0A068V0E3_COFCA; Uncharacterized protein
STRINGVIT_13s0067g01350.t011e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-32bHLH family protein