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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g06040 | ||||||||
Common Name | GSCOC_T00039128001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18620.2 Da PI: 5.982 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.2 | 7.7e-45 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+kdC++apyfpa++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++ Cc02_g06040 6 PCASCKLLRRRCTKDCPFAPYFPADDPHKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQ 103 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Cc02_g06040 104 AE 105 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.634 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MGGHSPCASC KLLRRRCTKD CPFAPYFPAD DPHKFAIVHK VFGASNISKM LQELPVHQRA 60 DAVSSLVYEA NARVRDPVYG CVGAISYLQN QVSELQMQLA VAQAEIFCIQ MQQDPMAMPT 120 PQFDDDDEGS FLLQHNLPQY LNFASSSSNV IQESFKKESP FGRDMVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-48 | 2 | 120 | 7 | 128 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-48 | 2 | 120 | 7 | 128 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101338.1 | 1e-122 | LOB domain-containing protein 12-like | ||||
Refseq | XP_027110735.1 | 1e-122 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 1e-71 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A068V243 | 1e-121 | A0A068V243_COFCA; Uncharacterized protein | ||||
STRING | XP_006486261.1 | 5e-98 | (Citrus sinensis) | ||||
STRING | XP_006435806.1 | 5e-98 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-74 | LBD family protein |
Publications ? help Back to Top | |||
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