PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g06040

Common Name

GSCOC_T00039128001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 168aa MW: 18620.2 Da PI: 5.982

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g06040	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.2	7.7e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+kdC++apyfpa++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++ Cc02_g06040 6 PCASCKLLRRRCTKDCPFAPYFPADDPHKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQ 103 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Cc02_g06040 104 AE 105 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.634	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MGGHSPCASC KLLRRRCTKD CPFAPYFPAD DPHKFAIVHK VFGASNISKM LQELPVHQRA 60 DAVSSLVYEA NARVRDPVYG CVGAISYLQN QVSELQMQLA VAQAEIFCIQ MQQDPMAMPT 120 PQFDDDDEGS FLLQHNLPQY LNFASSSSNV IQESFKKESP FGRDMVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	2	120	7	128	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	2	120	7	128	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027101338.1	1e-122	LOB domain-containing protein 12-like
Refseq	XP_027110735.1	1e-122	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-71	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A068V243	1e-121	A0A068V243_COFCA; Uncharacterized protein
STRING	XP_006486261.1	5e-98	(Citrus sinensis)
STRING	XP_006435806.1	5e-98	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-74	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]