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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc02_g06040 |
Common Name | GSCOC_T00039128001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
LBD |
Protein Properties |
Length: 168aa MW: 18620.2 Da PI: 5.982 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc02_g06040 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 143.2 | 7.7e-45 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
+Ca+Ck+lrr+C+kdC++apyfpa++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++
Cc02_g06040 6 PCASCKLLRRRCTKDCPFAPYFPADDPHKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQ 103
7**********************************************************************************************999 PP
DUF260 99 ee 100
+e
Cc02_g06040 104 AE 105
87 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 168 aa
Download sequence Send
to blast |
MGGHSPCASC KLLRRRCTKD CPFAPYFPAD DPHKFAIVHK VFGASNISKM LQELPVHQRA 60 DAVSSLVYEA NARVRDPVYG CVGAISYLQN QVSELQMQLA VAQAEIFCIQ MQQDPMAMPT 120 PQFDDDDEGS FLLQHNLPQY LNFASSSSNV IQESFKKESP FGRDMVS*
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