![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc02_g05620 | ||||||||
Common Name | GSCOC_T00039075001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 25914.7 Da PI: 8.8692 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118 | 5.7e-37 | 54 | 151 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk +rr+C+++ C+++pyfp ++p +fa vh++FGasnv+k+l+++pe+ r +++ slvyeA+ar+rdPvyG+++ i++lq+q+e+l+++l+++ Cc02_g05620 54 PCAACKQMRRRCSAKkCPFSPYFPPSEPLRFASVHRVFGASNVSKMLAEVPESLRAEVAISLVYEADARLRDPVYGCTAEISALQRQVESLQQQLNSA 151 7***********8655******************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.752 | 53 | 155 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-37 | 54 | 150 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MIISHFTKKR KKEKKDHGTS LIIDHYFFFS FFGGDGIRRG SSVLPGRCLS VIRPCAACKQ 60 MRRRCSAKKC PFSPYFPPSE PLRFASVHRV FGASNVSKML AEVPESLRAE VAISLVYEAD 120 ARLRDPVYGC TAEISALQRQ VESLQQQLNS AWDELLKYKN PHHEADIFNA EPPPSHDVAL 180 LPSVATTAAF PPPPSPTVLL VPPPPPTSSG SLLLSSSASS NQYCPLSAAA DFSTISN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 54 | 158 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 54 | 158 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 7 | 11 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027110660.1 | 1e-109 | LOB domain-containing protein 3-like | ||||
Swissprot | Q9AT61 | 3e-49 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A068UZS7 | 1e-173 | A0A068UZS7_COFCA; Uncharacterized protein | ||||
STRING | VIT_13s0067g02380.t01 | 1e-53 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30340.1 | 2e-51 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
---|---|---|---|
|