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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g04160 | ||||||||
Common Name | GSCOC_T00020319001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 41157.3 Da PI: 6.4468 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179 | 1.2e-55 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kk++ ++++l +vik+vd+yk+ePwdL++ ++ +ee+ ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s Cc02_g04160 7 VPPGFRFHPTDEELVDYYLRKKINCRRIDL-DVIKDVDLYKIEPWDLQElcRIGTEEQsEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS- 102 69****************************.9***************954555554445**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Cc02_g04160 103 KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-60 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.207 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MNTFTHVPPG FRFHPTDEEL VDYYLRKKIN CRRIDLDVIK DVDLYKIEPW DLQELCRIGT 60 EEQSEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPQAKGWVV CRVFKKRIAT MRKVSEHESP IWYDDQVSFM 180 AEMDSPKQHS QSNLTYQYPY SCKKETNLHY QIPPDHFLQL PLLESPKLLP APASMACNSL 240 PTYGVNMTHA SALQSSALTL EHMNQSQDQG LHSVYSSDLN NEQAMDQVTD WRVLDKFVAS 300 QLSQEEVSKE NDCSNATNAF PTSDDSNLML RHLEKQEMVP EMASTSSSSC QIDLWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-49 | 6 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00136 | DAP | Transfer from AT1G12260 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027103940.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Refseq | XP_027103941.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Refseq | XP_027103942.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Refseq | XP_027103943.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-148 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A068UAL7 | 0.0 | A0A068UAL7_COFCA; Uncharacterized protein | ||||
STRING | EOY22909 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-133 | NAC 007 |
Publications ? help Back to Top | |||
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