PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g04160
Common NameGSCOC_T00020319001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 357aa    MW: 41157.3 Da    PI: 6.4468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g04160genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1791.2e-5571361129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv++yL+kk++ ++++l +vik+vd+yk+ePwdL++  ++ +ee+ ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s 
  Cc02_g04160   7 VPPGFRFHPTDEELVDYYLRKKINCRRIDL-DVIKDVDLYKIEPWDLQElcRIGTEEQsEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS- 102
                  69****************************.9***************954555554445**************************************. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Cc02_g04160 103 KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                  8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-605156IPR003441NAC domain
PROSITE profilePS5100559.2077156IPR003441NAC domain
PfamPF023651.5E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNTFTHVPPG FRFHPTDEEL VDYYLRKKIN CRRIDLDVIK DVDLYKIEPW DLQELCRIGT  60
EEQSEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GTPQAKGWVV CRVFKKRIAT MRKVSEHESP IWYDDQVSFM  180
AEMDSPKQHS QSNLTYQYPY SCKKETNLHY QIPPDHFLQL PLLESPKLLP APASMACNSL  240
PTYGVNMTHA SALQSSALTL EHMNQSQDQG LHSVYSSDLN NEQAMDQVTD WRVLDKFVAS  300
QLSQEEVSKE NDCSNATNAF PTSDDSNLML RHLEKQEMVP EMASTSSSSC QIDLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-49615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103940.10.0NAC domain-containing protein 7-like
RefseqXP_027103941.10.0NAC domain-containing protein 7-like
RefseqXP_027103942.10.0NAC domain-containing protein 7-like
RefseqXP_027103943.10.0NAC domain-containing protein 7-like
SwissprotQ9FWX21e-148NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A068UAL70.0A0A068UAL7_COFCA; Uncharacterized protein
STRINGEOY229090.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-133NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]