PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g03270
Common NameGSCOC_T00020203001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 822aa    MW: 88553.5 Da    PI: 5.5412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g03270genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-20122177156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t+ q++eLe+ F++n++p++++r eL ++l+L+ +qVk+WFqNrR+++k
  Cc02_g03270 122 RKKYHRHTPFQIQELEASFKENPHPDEKARLELGRRLNLESKQVKFWFQNRRTQMK 177
                  7999*************************************************999 PP
2START169.91.7e-533295531206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++el+k+a+ + p+W++s     e +n +e+ + f++  +     + +ea +a+g v+ +++ lve+l+d + +W+e +     +a+t++v+
  Cc02_g03270 329 ELAVAAMDELLKLAQIDNPLWFRSLdgfsEALNLEEYNRVFPPCVGtkpsnFITEATKATGTVIINSTSLVEILMDPN-RWTELFScmigRASTIDVV 425
                  57899********************999999999999999988655899999**************************.9***9999999******** PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  ++g      galqlm ae+q+lsplvp R++ f+R+++q+ +g w++vdvSvds +  p+ + +  +++lpSg+++++++ng+ kv+wveh++++++ 
  Cc02_g03270 426 TDGtggtrnGALQLMHAEFQVLSPLVPvREVKFLRFCKQHAEGFWAVVDVSVDSIRGGPSAQIFSDCRRLPSGCIVQDMPNGYAKVIWVEHMEYDDSN 523
                  ***********************************************************8888889******************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h+ +r+l++sgl +ga++wvatl+rqce+
  Cc02_g03270 524 VHQSYRPLLRSGLGFGAQKWVATLERQCEC 553
                  ****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-21108181IPR009057Homeodomain-like
SuperFamilySSF466891.07E-19112179IPR009057Homeodomain-like
PROSITE profilePS5007117.605119179IPR001356Homeobox domain
SMARTSM003892.5E-18121183IPR001356Homeobox domain
CDDcd000861.75E-18122180No hitNo description
PfamPF000461.2E-17122177IPR001356Homeobox domain
PROSITE profilePS5084841.609320556IPR002913START domain
SuperFamilySSF559617.69E-32321553No hitNo description
CDDcd088753.97E-116324552No hitNo description
SMARTSM002341.9E-39329553IPR002913START domain
PfamPF018521.5E-45330553IPR002913START domain
SuperFamilySSF559611.22E-15573799No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MSFGGFIGGG SSGGGGGDAG LMMADNLYST IPTSALAHTQ PHMVSPPPMV QPIFNSLPLS  60
LAVKPKMEGA GDMGLIGENF GPGDADKSKE EEYESRSGSD NIEGASGDDQ DTQGDKASSS  120
GRKKYHRHTP FQIQELEASF KENPHPDEKA RLELGRRLNL ESKQVKFWFQ NRRTQMKTQM  180
ERHENNMLKQ ENDKLRIENI AMKEAMRNPV CSNCGGAAAL GEISIEEHHL RIENARLRDE  240
LSRICGLANK FLGRPLSSLA SPIAPGNSDL ELAVGRNAFA ALSSVGTPVP MGLDFTSAVT  300
NPLPILPTIR SSMGMTSFDV SIDKSMYLEL AVAAMDELLK LAQIDNPLWF RSLDGFSEAL  360
NLEEYNRVFP PCVGTKPSNF ITEATKATGT VIINSTSLVE ILMDPNRWTE LFSCMIGRAS  420
TIDVVTDGTG GTRNGALQLM HAEFQVLSPL VPVREVKFLR FCKQHAEGFW AVVDVSVDSI  480
RGGPSAQIFS DCRRLPSGCI VQDMPNGYAK VIWVEHMEYD DSNVHQSYRP LLRSGLGFGA  540
QKWVATLERQ CECLAVITSS TVPGGDHGVI SPSGRRSIAK LAQRMTHNFC AGVCATVYKW  600
EVVQVGNADE AKLVMRKSMG NPGEPPGVVL SATSTVWMPV SEQRLFDFLR NEQTRSQWDV  660
LSHDGAMQQM FHIAKGQDLG NSISLLRSSA TSPNSNQNGM LILQETSTDV SGSLIVYAAV  720
DIPAMNVVMS GGDSSCVVLL PSGFSIVPDC YPDSAGPNSS SGNFAKEATA GGGSNGCLLT  780
VGFQILVNSL PASKLTLESI DTVNALIGRT LQGIRSALEC S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103838.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
RefseqXP_027110362.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A068UC910.0A0A068UC91_COFCA; Uncharacterized protein
STRINGXP_009606532.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]