PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g02700

Common Name

GSCOC_T00020133001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 681aa MW: 75000.7 Da PI: 6.6417

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g02700	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	72	93	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C + F ++ n++rHir+H Cc02_g02700 72 KCEKCAQEFCSPVNYRRHIRVH 93 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.141	71	93	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MPVAKLSTGG TLDSMKSGDG NDSLDTVSRQ TVGKEPHISL SRTGDIPVPW FQLLHELPGW 60 PLLKPLKVQM EKCEKCAQEF CSPVNYRRHI RVHRRSLNFD KESHKIRDML AAFWDKLSLE 120 DAKEVVSLRD VTLKEVTGTS VIKSLAASLH KPGVWTLPQV YVEAGSTLLD VIHAKSSRLP 180 ISSQELFSIL DDASERTFLR AGTAESVLKY IFGGKPGRIA FELKNLVACT SFLFELKLVK 240 AWVADKDVEA LRCQKLLVEE EEAAQKRQAE LLERKKQKKL RQKEQKAREH SNGDGVALID 300 ATSSEGSFLA EMCSSSPPDS SPDAPCTVDD GTTFLEPVQL SSTEQNNDIE AQFDLSSGHL 360 DSGLVQNVEP TMVSVNGRRW RQVPKSHWAG RSGFHGNQNH QVSKLEPVQK LVPAKDRGTV 420 VSSSKVWTKK LKVDNDEEIL RPTLEEAVNK SDENKCELII GSISIPVTNC ILRKNKISLG 480 EPHYSCSTEE GKHKSNVLEE PANSDSHQLG LNEAATDLWM PASLHGSRDP SPVPRANHDA 540 QDGVMVDKLE DRTASDGSCL QSSSSDDDHC QSREGLTCVY EGVALPQGLQ RSTAAAKAFL 600 AQRWKEAISA EHVTTLVLSE ESDLPGLPEN QIDISALDFE NRQVDVGRIS STGRITKAKN 660 RTNSEKGVKI KYIPKQKVAS *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MPVAKLSTGG TLDSMKSGDG NDSLDTVSRQ TVGKEPHISL SRTGDIPVPW FQLLHELPGW  60
PLLKPLKVQM EKCEKCAQEF CSPVNYRRHI RVHRRSLNFD KESHKIRDML AAFWDKLSLE  120
DAKEVVSLRD VTLKEVTGTS VIKSLAASLH KPGVWTLPQV YVEAGSTLLD VIHAKSSRLP  180
ISSQELFSIL DDASERTFLR AGTAESVLKY IFGGKPGRIA FELKNLVACT SFLFELKLVK  240
AWVADKDVEA LRCQKLLVEE EEAAQKRQAE LLERKKQKKL RQKEQKAREH SNGDGVALID  300
ATSSEGSFLA EMCSSSPPDS SPDAPCTVDD GTTFLEPVQL SSTEQNNDIE AQFDLSSGHL  360
DSGLVQNVEP TMVSVNGRRW RQVPKSHWAG RSGFHGNQNH QVSKLEPVQK LVPAKDRGTV  420
VSSSKVWTKK LKVDNDEEIL RPTLEEAVNK SDENKCELII GSISIPVTNC ILRKNKISLG  480
EPHYSCSTEE GKHKSNVLEE PANSDSHQLG LNEAATDLWM PASLHGSRDP SPVPRANHDA  540
QDGVMVDKLE DRTASDGSCL QSSSSDDDHC QSREGLTCVY EGVALPQGLQ RSTAAAKAFL  600
AQRWKEAISA EHVTTLVLSE ESDLPGLPEN QIDISALDFE NRQVDVGRIS STGRITKAKN  660
RTNSEKGVKI KYIPKQKVAS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	279	ERKKQKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027103753.1	0.0	uncharacterized protein LOC113725006
TrEMBL	A0A068U9P1	0.0	A0A068U9P1_COFCA; Uncharacterized protein
STRING	XP_009758251.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-120	C2H2-like zinc finger protein