PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g00700
Common NameGSCOC_T00019860001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 632aa    MW: 69874.6 Da    PI: 5.0438
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g00700genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.7e-51101381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp+G+rF+Ptdeel+++yL+ k++g + ++ ++i+evdi+k ePwdLp  + +k+ ++ew+fF+++d+ky++g+r nrat +gyWkatgkd+++ ++k
  Cc02_g00700  10 LPVGYRFRPTDEELIDHYLRLKINGLDKDV-SIIREVDICKKEPWDLPdlSPIKSYDNEWFFFCPKDRKYQNGQRLNRATMKGYWKATGKDRNIRARK 106
                  799************************999.89**************96447888999**************************************** PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  g+++g+kktLvfy grap+g++t+Wv+heyr+
  Cc02_g00700 107 GTKIGMKKTLVFYIGRAPDGKRTNWVIHEYRA 138
                  ******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-583161IPR003441NAC domain
PROSITE profilePS5100555.42610161IPR003441NAC domain
PfamPF023652.3E-2611137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MMTVLPVKQL PVGYRFRPTD EELIDHYLRL KINGLDKDVS IIREVDICKK EPWDLPDLSP  60
IKSYDNEWFF FCPKDRKYQN GQRLNRATMK GYWKATGKDR NIRARKGTKI GMKKTLVFYI  120
GRAPDGKRTN WVIHEYRATN KELDGTHPGQ GSFVLCRLFK KHELKQDETA DGSNLVEVET  180
IVPSPTTEKS PLEDGNSEAL TPVAGSQAEV HPSSAESCPA KGSDGAIVVN PLPTSWQNDC  240
SLSAEEKGQV IDPMCIQSDP DLIESLRDIF DDPIPEALDW KIFSPLHSQV QLELGSGYMC  300
NPVSNDINCD AKSMASQYGT NTYDVNKFLN SILVNSDEYS YEESCINAIS TVECGTPGDT  360
KPMNGAFVRD GGSCSDSEAE VTQGQFEAGF FESELFMGNI EGYGTLQMAN MEQDAHRADV  420
SIDNQEGKLN LAGNNHLGHN AYAAVFNGSV VPDLLSTEVP GVHNNDTGTD STSGTGIKLR  480
SRQFQSFSSN PTFAAHGIAP RRLRLQNKLQ IGPVQCSLLR ESVCTEEIDD GQSAVTEDEK  540
ATKRNTDAAY TEEKGDVLLK KCNKNVGGST VGVRESRGEF LSTCIKNCVR APSKEDWLHV  600
VPSPMFMRKI FVIITLLVVF IGIWQFFGVQ K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-421016115168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027109935.10.0protein NTM1-like 9 isoform X2
TrEMBLA0A068U8Z40.0A0A068U8Z4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-87TCV-interacting protein