PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g19690
Common NameGSCOC_T00016026001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 293aa    MW: 31789.3 Da    PI: 5.1227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g19690genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09165213255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+++  ++rrRR ri ++ e L+ellP++     +   Ka++L   +++Ik+Lq
  Cc01_g19690 165 RQKAATADRRRRLRISEGVEALQELLPHP-----REGGKASVLDDIIDHIKYLQ 213
                  899999**********************8.....5677999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-12162223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.027163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-11163223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.25E-9165217No hitNo description
PfamPF000105.6E-7165213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-7169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEDESNCNAF PFTATTLAFG GRGSSSSNNH NVYYMQEEAD HSHYLNFAAA AAASNDTTPH  60
HAPTTLPSWL CCQPTPQNYV HFLAENGASQ VHNEILPFNN SPGSSGFTTP EASFDMVGYK  120
RPHTEGVPPS NLTVLGFQIP SQNSNESYGT AVTGSPSTVP SSTSRQKAAT ADRRRRLRIS  180
EGVEALQELL PHPREGGKAS VLDDIIDHIK YLQFQVKELS QSRLGGESSS TPFILLEGYG  240
HFLLRDQMQN EPLEEMMGRL LEVNPLAATQ LLESGGLIVM PMSLAEGLRP QN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177935.10.0transcription factor bHLH69-like isoform X3
RefseqXP_027177938.10.0transcription factor bHLH69-like isoform X3
RefseqXP_027177944.10.0transcription factor bHLH69-like isoform X3
RefseqXP_027177949.10.0transcription factor bHLH69-like isoform X3
TrEMBLA0A068U5N60.0A0A068U5N6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000025122e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96461617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-21LJRHL1-like 2