PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g19570
Common NameGSCOC_T00016042001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 718aa    MW: 79624.9 Da    PI: 5.7229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g19570genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.4e-14513559455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Cc01_g19570 513 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 559
                  7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.3E-5410207IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625509558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-19511575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-15513563No hitNo description
Gene3DG3DSA:4.10.280.103.6E-19513573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11513558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17515564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MAAPPSSREL QHMLQRAVQT VEWTYSLFWQ LCPQQRILVW GDGYYNGAIK TRKTVQPMEV  60
SAEEASLQRS QQLRELYDAL SSGDTNQQQQ QARRPSASLS PEDLTESEWF YLMCVSFSFA  120
PGVGLPGRAY AKRQHVWLTG ANEVDSKLFT RAILAKSARI QVVNDTNSFP CKLQTVVCIP  180
LLDGVVELGT VERVQEDLGF VQHIKSICAE HQQPHQTPKP ALSEHSTSSP ATASGPRFHS  240
STVPVPATYT TIHTSQDNSD QIEEEEEEEE EDDEVDADAD AVADSDSDGE TVPQSSAPSS  300
GVQNPNSMPQ IKTTEPSELV QLDMSEDIRL GSPEDGSNNW DSDYHLLPHG PNKNQEVQQN  360
RPDLCSSQST PRWPRIQDPG INHSLEPAPT TSGVPLSENE FAQEDSHFSQ TVSTILHHQS  420
SRCSSSSMTG NVTQSIHSAF SKWPATSCDS LAHGNLRGSS SQWTLKYILF TVPFLHASKS  480
GDETSPKSRD AAAISDSASR LRKGTPQEEL SANHVLAERR RREKLNERFI ILRSLVPFVT  540
KMDKASILGD TIEYVKQLRK KIQELEARFR QMEPDGHPKK NAKEQRSSSN NTAARVQVGQ  600
GLDRRKMRIV EDSPTGGGKP KAAVVSPAEG VLQVEVSIIE SDALVELQCP HREGLLLDVM  660
QMLRELRVEI TAVQSSLCNG FFVAELRAKV KEYANGRRAT IMEVKRAINQ IIPQYLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t0f_A1e-18101969180Transcription factor MYC3
5t0q_A1e-18101969180Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1517522ERRRRE
2518523RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027179252.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A068U6240.0A0A068U624_COFCA; Uncharacterized protein
STRINGVIT_07s0104g00090.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.17e-94bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]