PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g19370 | ||||||||
Common Name | GSCOC_T00016066001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 87aa MW: 9911.24 Da PI: 8.506 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 26.3 | 2e-08 | 14 | 46 | 96 | 128 |
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +g+k+ L f++g++ kg+kt+W m +yrl Cc01_g19370 14 SAAWMGVKRRLCFFEGEHGKGSKTNWNMIQYRL 46 45679**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 15.023 | 1 | 81 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-10 | 14 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MGTGRRWDAQ TIKSAAWMGV KRRLCFFEGE HGKGSKTNWN MIQYRLLHHC CSIECDHRRP 60 RVSSAAPSQP DDGVLCKVYE DLDESR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009589729.1 | 1e-14 | PREDICTED: NAC domain-containing protein 72-like | ||||
TrEMBL | A0A068U651 | 6e-59 | A0A068U651_COFCA; Uncharacterized protein | ||||
STRING | XP_009589729.1 | 5e-14 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17709 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.3 | 2e-09 | NAC family protein |