PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g19020
Common NameGSCOC_T00016112001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 355aa    MW: 40286.9 Da    PI: 5.4904
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g19020genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.9e-36431342102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+++++++sws+ g+sfvv+d++ f++ +Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++i+
   Cc01_g19020  43 FLTKTFDMVDDSTTDHIVSWSRGGHSFVVWDPHAFSTALLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEAFLRGQKHLLRNIR 130
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Cc01_g19020 131 RRKA 134
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-6139132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3639132IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3939132IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.8E-204366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3243132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-2094106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDPLYPVKEE YPDQYHAGSS SSPPGTLAPQ PMEGLHDAGP PPFLTKTFDM VDDSTTDHIV  60
SWSRGGHSFV VWDPHAFSTA LLPRYFKHNN FSSFVRQLNT YGFRKIDPDK WEFANEAFLR  120
GQKHLLRNIR RRKAPSQPTS PQQALGPCVE VGRFGLDAEV DRLRRDKQVL MMELVKLRQQ  180
QQSTRAHLQS MEVRLQGTEK KQQHMMSFLA KAMQNPEFIH QLIQQKDKRK ELEEAFTKKR  240
PRPIDQGPGG GESSRSGEVR NHVKAEPSEF GDPYGYQVSE LEALALEMQG FGRAARRDRD  300
EEQDELDKEL DEGFWEELLN EGFDEEGETG KEGGGEEDVN VLADRFGSLG SSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-253813212120Heat shock factor protein 1
5d5u_B1e-253813221129Heat shock factor protein 1
5d5v_B1e-253813221129Heat shock factor protein 1
5d5v_D1e-253813221129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238242KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115041.10.0heat stress transcription factor A-2b-like isoform X1
SwissprotQ6VBB21e-129HFA2B_ORYSJ; Heat stress transcription factor A-2b
SwissprotQ9LUH81e-129HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A068U6A90.0A0A068U6A9_COFCA; Uncharacterized protein
STRINGEOX946440.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-121heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]