PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g19010
Common NameGSCOC_T00016114001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 485aa    MW: 53462.2 Da    PI: 9.1958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g19010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-057193123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Cc01_g19010 71 FVCEICNKGFQRDQNLQLHRRGH 93
                 89*******************88 PP
2zf-C2H213.40.00023147169123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Cc01_g19010 147 WKCEKCSKIYAVQSDWKAHTKTC 169
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.05E-67093No hitNo description
PROSITE profilePS5015710.9497193IPR007087Zinc finger, C2H2
PfamPF121717.7E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355260112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.05E-6142167No hitNo description
SMARTSM00355160147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MSNSASLSEE ASVSSVSKVQ DFGSLNPMVQ TSSSHQQPQK IKKKRNLPGN PDPDAEVIAL  60
SPKTLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRNNKEIKKR AYVCPEPTCV  120
HHHPSRALGD LTGIKKHYCR KHGEKKWKCE KCSKIYAVQS DWKAHTKTCG TREYRCDCGT  180
LFSRKDSFIT HRAFCDALAQ ESARLSANSV LSATAAATVN PQLFRLNFHQ TTTTPSSLFP  240
FPPTQHDQQQ PHFPNPPTPT PTDHHISLNH PWVDSCQNPK PTQYPNQPQL LHDIKPETLH  300
LPISSPFLYQ EPPPPTHKRI NIPSLIPVQT QLNDTAGVHH LSATALLQKA ATLGAHSVGH  360
VNSAMTQLDM STIGHVTNGI PPEYSGFTTS ANLAAWQKSD RLTRDFLGLT GDHQSCGGGG  420
GSVNGNGNGN IDVNVNVNMR GVLSFTGSVE FPATYERDLS LLKHQSFGFA EPAASEAWRN  480
CSRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-36143209369Zinc finger protein JACKDAW
5b3h_F7e-36143209369Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096028.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
RefseqXP_027115030.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
TrEMBLA0A068U5640.0A0A068U564_COFCA; Uncharacterized protein
STRINGPOPTR_0002s04880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-114indeterminate(ID)-domain 12