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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g18220 | ||||||||
Common Name | GSCOC_T00016231001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 33359.1 Da PI: 6.2357 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.2 | 9.9e-51 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF P+deelv++yL kk+++ +++ +++ e+d++++ePw+Lp +k +++ewyfFs rd+kyatg r+nrat++gyWkatgkd++vl+ ++ Cc01_g18220 10 LPPGFRFYPSDEELVCHYLYKKIANGEVSR-DTLVEIDLHTCEPWQLPDVAKLNSNEWYFFSFRDRKYATGFRTNRATTTGYWKATGKDRTVLDPtRR 106 79*************************999.88***************87778899**************************************9777 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 + vg++ktLvfy++rap+g kt W+mhe+rle Cc01_g18220 107 SIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 88***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-61 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.874 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANGEVSRD TLVEIDLHTC EPWQLPDVAK 60 LNSNEWYFFS FRDRKYATGF RTNRATTTGY WKATGKDRTV LDPTRRSIVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLENP HVPPKEDWVL CRVFHKAKVE SVDNDVYDAT AGGGCGGGGD 180 ISPTFAASPP NVDHCTAGGY NQNSSFSQSP PHQSQNSSST AALPNMSAVL GRNYLQSSSQ 240 ELCSVTASRN DQMVHSKSEL DEYGFLFNMN FGEANLRDGG VPSGLEEMHF DDDSSLVFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-48 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027094925.1 | 0.0 | protein CUP-SHAPED COTYLEDON 2-like isoform X1 | ||||
Swissprot | Q84TE6 | 5e-63 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A068U6G4 | 0.0 | A0A068U6G4_COFCA; Uncharacterized protein | ||||
STRING | EOX94424 | 1e-124 | (Theobroma cacao) | ||||
STRING | XP_009800923.1 | 1e-124 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1882 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-90 | NAC domain containing protein 74 |