 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc01_g18220 |
Common Name | GSCOC_T00016231001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
Family |
NAC |
Protein Properties |
Length: 300aa MW: 33359.1 Da PI: 6.2357 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc01_g18220 | genome | CGSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 163.2 | 9.9e-51 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97
lppGfrF P+deelv++yL kk+++ +++ +++ e+d++++ePw+Lp +k +++ewyfFs rd+kyatg r+nrat++gyWkatgkd++vl+ ++
Cc01_g18220 10 LPPGFRFYPSDEELVCHYLYKKIANGEVSR-DTLVEIDLHTCEPWQLPDVAKLNSNEWYFFSFRDRKYATGFRTNRATTTGYWKATGKDRTVLDPtRR 106
79*************************999.88***************87778899**************************************9777 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129
+ vg++ktLvfy++rap+g kt W+mhe+rle
Cc01_g18220 107 SIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
88***************************985 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANGEVSRD TLVEIDLHTC EPWQLPDVAK 60 LNSNEWYFFS FRDRKYATGF RTNRATTTGY WKATGKDRTV LDPTRRSIVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLENP HVPPKEDWVL CRVFHKAKVE SVDNDVYDAT AGGGCGGGGD 180 ISPTFAASPP NVDHCTAGGY NQNSSFSQSP PHQSQNSSST AALPNMSAVL GRNYLQSSSQ 240 ELCSVTASRN DQMVHSKSEL DEYGFLFNMN FGEANLRDGG VPSGLEEMHF DDDSSLVFI*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-48 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by auxin. |
Publications
? help Back to Top |
- Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]
|