PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g16050
Common NameGSCOC_T00016487001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 536aa    MW: 60098.7 Da    PI: 7.6238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g16050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13342385755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  + Er+RR+riN+++ +Lr+l+P+ +      K++Ka++L  A +YI++Lq
  Cc01_g16050 342 ITERNRRHRINHGLLTLRSLVPNiS------KMDKASTLADAYDYIQELQ 385
                  68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-1951194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.663335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-17335401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-12338389No hitNo description
SMARTSM003531.1E-15341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-11342385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15342402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.31E-4460523No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MLQQQKGTKS SSSSCSSKTI RGTSQQGQAP DRYKEVFERF KDMAALDQAL ERLRVLVKNN  60
VWGYCIVWKL GDDPSSFIEW RGCCCSGGNW LENVKEESGK DQYLFAQCRD GHFKHPIRTK  120
ACEKLAKFPL SIPLYSGIHG EVVMSNQARW HVNSNNTSSD EAIGTQVLVP VAGGLIELFS  180
TNLVQETQQI IDFILAQYVP VELETMASHR RTELNAAEPP HKPFLDDCFN NLPASVCHMI  240
SVPNLQYPTF IPNSSNHPSF EGSSISSDLP KDYQLLNVCS GSASCSTSPE KSSGRHPGYL  300
DSRRMKDPSC GFGSAKWAAE TNENLRGRNK TERDNYHSKN LITERNRRHR INHGLLTLRS  360
LVPNISKMDK ASTLADAYDY IQELQKSVEE YQGKLRDLAE QEANMYSSEQ EVPRSCREIQ  420
RTDYQPTIEQ GDSRRHSSTN DKKQGKVKIE VSQIGTRDFL VKIICTQKRG CFLRLMQAMD  480
SFGLQVTDAN VTTSNGLVLN VLKAEAFSEE IQATTLKNSL MELFLQDGQG KIQLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027113142.10.0transcription factor bHLH90-like
TrEMBLA0A068U6340.0A0A068U634_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-64bHLH family protein