PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 750aa MW: 83723.4 Da PI: 4.98

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g13060	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	378.4	8.7e-116	375	746	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+ v+++d++ a++ L+++++++sp+gd+ qRla+ f+++L+arla++++e+y+al++++ s +e+l+a++++ ++P+ k+s + a Cc01_g13060 375 LRTLLISCAQSVANDDQRTAREQLKQIRQHSSPSGDACQRLASIFANGLEARLAGTGTEIYAALASKRIS---AAEKLKAYQVYLSACPFKKISIFFA 469 6789**********************************************************999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I+ ++ ++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg+++p++g +e++eetg+rLa+++e+++vpfe+++++++++e++++e+L Cc01_g13060 470 NKMIVHKASDAKTLHIVDFGILYGFQWPILIQHLSTRPGGPPKLRITGIERPQPGfrPSERVEETGRRLARYCERFHVPFEYQAIAEQNWEAIKVEDL 567 ********************************************************************************9999****** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++ +gE+laVn +q +l+de+v+++s+rd+vL+l+++++P+++v + + +++++ F++rf eal +ys+lfd ++a+lpre+ +r+++E++++gr Cc01_g13060 568 NIAEGEVLAVNALFQFNNLFDETVKVDSPRDAVLRLIRKMNPDIFVNAVTNGSYSAPFFVTRFREALFHYSSLFDIFDATLPREDLQRMNLEQQFFGR 665 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e+ n++acegaer+ r et+++W+ r ++aGFkp+pl+++ ++ + ++ + + + +e+ ++++gWk+r L+s S+W Cc01_g13060 666 EAINIIACEGAERVVRPETYKQWQVRHTRAGFKPLPLNQELLEKLRGKVKGGYHKDFVFDEDGSWMLQGWKGRILYSSSCW 746 ***********************************************99888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.547	349	727	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-113	375	746	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MDPRFNQLPD SVNGFKFEDE IVLPSFEESP NLLNGFKFGD NALDLNFVDT SSFSPTPGTG 60 NLPAFSTGSS EVDSPDDGDS DPVLRYLNQI LLEENMEEKP SMFPDPLALR AAEKSLYDAL 120 GQKYPPSPYQ VDQNAESPDS LFGSASEHSA NSSSSASSSV EPGEYKSAAG QSYSLDYSFP 180 LSSENSSNLL FNSVSSFGNH MNGQLNSLAY NNPIPNIFSD SESISQFKKG MEEASKFLPS 240 GNQLIIDLDK YALPPKSEEI FLESKVKEEK DDGDHSPNGS RGRKHLHRQE SDIEQQRSSK 300 QSAVYDEEAV YDEEAELSEM FDRVLLCTDI KWCHVAAQLH DEANKTGQQN GLPDGTGGGK 360 TRSRNQGSKS EAVDLRTLLI SCAQSVANDD QRTAREQLKQ IRQHSSPSGD ACQRLASIFA 420 NGLEARLAGT GTEIYAALAS KRISAAEKLK AYQVYLSACP FKKISIFFAN KMIVHKASDA 480 KTLHIVDFGI LYGFQWPILI QHLSTRPGGP PKLRITGIER PQPGFRPSER VEETGRRLAR 540 YCERFHVPFE YQAIAEQNWE AIKVEDLNIA EGEVLAVNAL FQFNNLFDET VKVDSPRDAV 600 LRLIRKMNPD IFVNAVTNGS YSAPFFVTRF REALFHYSSL FDIFDATLPR EDLQRMNLEQ 660 QFFGREAINI IACEGAERVV RPETYKQWQV RHTRAGFKPL PLNQELLEKL RGKVKGGYHK 720 DFVFDEDGSW MLQGWKGRIL YSSSCWSPA*

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MDPRFNQLPD SVNGFKFEDE IVLPSFEESP NLLNGFKFGD NALDLNFVDT SSFSPTPGTG  60
NLPAFSTGSS EVDSPDDGDS DPVLRYLNQI LLEENMEEKP SMFPDPLALR AAEKSLYDAL  120
GQKYPPSPYQ VDQNAESPDS LFGSASEHSA NSSSSASSSV EPGEYKSAAG QSYSLDYSFP  180
LSSENSSNLL FNSVSSFGNH MNGQLNSLAY NNPIPNIFSD SESISQFKKG MEEASKFLPS  240
GNQLIIDLDK YALPPKSEEI FLESKVKEEK DDGDHSPNGS RGRKHLHRQE SDIEQQRSSK  300
QSAVYDEEAV YDEEAELSEM FDRVLLCTDI KWCHVAAQLH DEANKTGQQN GLPDGTGGGK  360
TRSRNQGSKS EAVDLRTLLI SCAQSVANDD QRTAREQLKQ IRQHSSPSGD ACQRLASIFA  420
NGLEARLAGT GTEIYAALAS KRISAAEKLK AYQVYLSACP FKKISIFFAN KMIVHKASDA  480
KTLHIVDFGI LYGFQWPILI QHLSTRPGGP PKLRITGIER PQPGFRPSER VEETGRRLAR  540
YCERFHVPFE YQAIAEQNWE AIKVEDLNIA EGEVLAVNAL FQFNNLFDET VKVDSPRDAV  600
LRLIRKMNPD IFVNAVTNGS YSAPFFVTRF REALFHYSSL FDIFDATLPR EDLQRMNLEQ  660
QFFGREAINI IACEGAERVV RPETYKQWQV RHTRAGFKPL PLNQELLEKL RGKVKGGYHK  720
DFVFDEDGSW MLQGWKGRIL YSSSCWSPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-49	358	748	1	379	Protein SCARECROW
5b3h_D	7e-49	358	748	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027158482.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A068ULG0	0.0	A0A068ULG0_COFCA; Uncharacterized protein
STRING	XP_009606498.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]