 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc01_g11840 |
Common Name | GSCOC_T00028097001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
Family |
AP2 |
Protein Properties |
Length: 507aa MW: 55759.5 Da PI: 6.2032 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc01_g11840 | genome | CGSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 53.5 | 5.8e-17 | 167 | 216 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Cc01_g11840 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
78*******************......55************************997 PP
|
2 | AP2 | 42 | 2.3e-13 | 259 | 309 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g
Cc01_g11840 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 309
89********.7******5553..2.26**********99**********99776 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 507 aa
Download sequence Send
to blast |
MLDLNLSVVN DEEAGIFEEG MGEYESAEET SDSSVVNAEA AEASSNATTV DDDTCSARAG 60 ANSSSDLLTF NFDILKVNGA NRGEEVEGED ENQVVFGGRM TAAHQPDFVT KNLFPVAELG 120 PGRAPDQARS NASNWADLSF SHQPKQPPQQ QQQQVKKSRR GPRSRSSQYR GVTFYRRTGR 180 WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFTICDYEE DMKQMKNLTK 240 EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY 300 DKAAIKCNGR EAVTNFEPST YEPEMPSNMV QPHSQNEGSH YDLDLNLGIS TSSGKENGSS 360 RDVHYHPYDV QKARISKVDI SSTTVNSPPL KGLPLTPERP QLWTGVYSNS MPNYKERVIE 420 NRFEVGSSQG PQKWAWQMQS PLSATPVTVF STAASSGFSS SASNASSPSS KAPNSSAVGL 480 CFASYPVSSA NNSQCRFQLG PQWPPT*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |