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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g11610 | ||||||||
Common Name | GSCOC_T00028065001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22371.3 Da PI: 7.2709 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.6 | 3.6e-42 | 40 | 139 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+a+la+++ Cc01_g11610 40 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGSAGAICQLQKQVNDLQAQLAKTQ 137 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Cc01_g11610 138 AE 139 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.105 | 39 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.0E-42 | 40 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGYSDTTTAT TITSKSSRSV SPSSPSSPPT PPPPAVVVSP CAACKILRRR CAEKCVLAPY 60 FPPNDPIKFT TAHRVFGASN IIKFLQELPE SQRADAVSSM VYEANARLRD PVYGSAGAIC 120 QLQKQVNDLQ AQLAKTQAEL VNMQCQQANL MALICMEMAQ SPQASSPQQQ SFDNNFINSS 180 SQLAAFQANL NLLDDSHPWD HPALWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-42 | 39 | 147 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-42 | 39 | 147 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108409.1 | 1e-151 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 2e-69 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A068UL04 | 1e-150 | A0A068UL04_COFCA; Uncharacterized protein | ||||
STRING | XP_009610820.1 | 2e-90 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-64 | LOB domain-containing protein 1 |