 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cc01_g11350 |
| Common Name | GSCOC_T00024263001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
| Family |
NAC |
| Protein Properties |
Length: 310aa MW: 34918.5 Da PI: 7.1629 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc01_g11350 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 154 | 6.6e-48 | 12 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99
ppG+rFhP+deel+v+yL++kv++++l++ v+ e+++y+++PwdLpkk+ +e+ewyfFs+rd+ky++g ++nr+++sgyW+atg+dk++ls++g+
Cc01_g11350 12 PPGVRFHPSDEELIVFYLHNKVNSRPLPA-AVVGEIELYSHNPWDLPKKALFGEEEWYFFSPRDRKYPNGAQPNRTAASGYWRATGTDKPILSSSGAR 108
9****************************.89***************8888899******************************************** PP
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
+g+kk+Lvfy g+ +g+ktdW+m eyrl
Cc01_g11350 109 IGIKKSLVFYIGKPLNGVKTDWIMIEYRL 137
***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
METQPISSFQ FPPGVRFHPS DEELIVFYLH NKVNSRPLPA AVVGEIELYS HNPWDLPKKA 60
LFGEEEWYFF SPRDRKYPNG AQPNRTAASG YWRATGTDKP ILSSSGARIG IKKSLVFYIG 120
KPLNGVKTDW IMIEYRLPDT HKKPSRSKGS MRLDDWVLCR IRQKGTMSKN SWEVPQSPNT 180
VMEDTPNLKE LPPAYPANNA SDICSTYFLS KDCHLLAKLL ATQDLPPIET NTIATYHGGN 240
KSQNCETVYE HGLIKENQVA NSFFPSSLNQ QGKPIEEIGY ESIPPSEKAM TNLNEFFLAG 300
NMDCTSFYN*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-67 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-67 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-67 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-67 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-67 | 2 | 164 | 8 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-67 | 2 | 164 | 8 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
