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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cc01_g11320 |
| Common Name | GSCOC_T00024259001 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
NAC |
| Protein Properties |
Length: 346aa MW: 38950.1 Da PI: 8.5261 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc01_g11320 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 156.2 | 1.4e-48 | 12 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99
ppG+rF P+deel+v+yL++kv++++l++ v+ e+++y+++PwdLpkk+ +e+ewyfFs+rd+ky++g r+nr+++sgyWkatg+dk++ls +g+
Cc01_g11320 12 PPGVRFYPSDEELIVYYLHNKVNSRPLPA-AVVGEIELYSYNPWDLPKKALFGEEEWYFFSPRDRKYPNGARPNRTAASGYWKATGTDKPILSCSGAR 108
9****************************.89***************8888899******************************************** PP
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
+g+kk Lvfy g+ p+g+ktdW+m eyrl
Cc01_g11320 109 IGVKKALVFYIGKPPNGVKTDWIMIEYRL 137
***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
METQPISSFQ FPPGVRFYPS DEELIVYYLH NKVNSRPLPA AVVGEIELYS YNPWDLPKKA 60
LFGEEEWYFF SPRDRKYPNG ARPNRTAASG YWKATGTDKP ILSCSGARIG VKKALVFYIG 120
KPPNGVKTDW IMIEYRLPDT HKRPSRSTGS MRLDDWVLCR IRQKGNMSKN SWEVPHSPIK 180
VTEDTPNLKE LHSAYAAKNA LDICSSYFLS KDCHLLAKLL ATQDLPRFET NTRATSCSSN 240
ISQNCKTVYE HGTIEENQVT NSFFPSSLNQ QGKPIEEIGY GNIPPSEKAM TNLNKNEFFL 300
AGNVNGASFY NQQQSHGDMF KLNLSSAMMT LQELDVSAFA AKFLP*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-71 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-71 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-71 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-71 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-71 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-71 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-71 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-71 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-71 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-71 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-71 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-71 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-71 | 2 | 164 | 8 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-71 | 2 | 164 | 8 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
