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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc01_g11310 |
Common Name | GSCOC_T00024258001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
C2H2 |
Protein Properties |
Length: 460aa MW: 50010.8 Da PI: 9.4654 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc01_g11310 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F r nL+ H r H
Cc01_g11310 6 FICEICNKGFQRDQNLQLHRRGH 28
89*******************88 PP
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2 | zf-C2H2 | 12 | 0.00064 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H + +
Cc01_g11310 82 WKCEKCSKKYAVQSDWKAHSKIC 104
58*****************9876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 460 aa
Download sequence Send
to blast |
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK EVKKKVYICP EKTCVHHDPS 60 RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRK 120 DSFITHRAFC DALAEESARF APIPSANLNF RNELFNGGLS SLQPAGNPQF SNSIAGLDPA 180 TGQLNLNGQK PRLPLWLDNA NTQLNNPIGN HPGNSNAFLA SSSTSLPELV QMTPTNMLGL 240 SSQNQWFNIG GNASSSGLPR VLKEEEENRG NLSDHISSLY YNNGQNSSQH ETAPAHMSAT 300 ALLQKAAQMG STRSNSAIFG TGFGLMSSSL SSLSNFNSLN QSRNELQNFG QAENLNGLMT 360 STSQSTMTTN QGDGLLLGNM SSSNNLVGNL RHPSAPPTIM PGSTDRGGSQ SKSSGNEAEG 420 GLTRDFLGVG GNESRPFLQQ NELVKFASSM SSAMDFGNQ*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |