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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc01_g11100 |
Common Name | GSCOC_T00024228001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
HD-ZIP |
Protein Properties |
Length: 483aa MW: 52767.1 Da PI: 8.3587 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc01_g11100 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 57.5 | 2.2e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+
Cc01_g11100 27 KYVRYTAEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
56789****************************************************97 PP
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2 | START | 160.3 | 1.5e-50 | 167 | 375 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97
+aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+++l +++
Cc01_g11100 167 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVYTQ 263
789*******************************************************.7777777777***********999999999********* PP
XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
+a+++l+p Rdf+++Ry+ +l+ g++v++++S++ + p+ s++ Rae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ +
Cc01_g11100 264 IYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGTGAGPNaaaASQFTRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 361
***************************************9999999**************************************************** PP
HHHHHHHHTXXXXX CS
START 192 gaktwvatlqrqce 205
++k++ a+l++ ++
Cc01_g11100 362 AQKMTIAALRYVRQ 375
*********99765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 483 aa
Download sequence Send
to blast |
MAMVAQQHRE SSSGSISKQN SSIDSGKYVR YTAEQVEALE RVYTECPKPS SLRRQQLIRE 60 CPILSNIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL 120 VCENGYMRQQ LQTASAATTT DASCESVVTT PRHSLRDANN PAGLLSIAEE TLTEFLSKAT 180 GTAVDWVQMP GMKPGPDSVG IFAISHSCSG VAARACGLVS LEPTKIAEIL KDRPSWFRDC 240 RSLEVFTMFP AGNGGTIELV YTQIYAPTTL APARDFWTLR YTTTLENGSL VVCERSLSGT 300 GAGPNAAAAS QFTRAEMLPS GYLIRPCDGG GSIIHIVDHL NLEAWSVPEV LRPLYESSKV 360 VAQKMTIAAL RYVRQIAQET SGEVVYGLGR QPAVLRTFSQ RLSRGFNDAI NGFNDDGWSL 420 LSCDGAEDVI IAVNSTKSLS TSSNSLSVIG GILCAKASML LQASNLSHNL FFIITSSAKQ 480 SC*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Publications
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- Lian H,Li X,Liu Z,He Y
HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis. J. Exp. Bot., 2013. 64(11): p. 3397-410 [PMID:23918970] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Baima S, et al.
Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module. Mol Plant, 2014. 7(6): p. 1006-1025 [PMID:24777988] - Jia X, et al.
Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] - Roodbarkelari F,Du F,Truernit E,Laux T
ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response. BMC Biol., 2015. 13: p. 74 [PMID:26358077] - Shi B, et al.
Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis. PLoS Genet., 2016. 12(7): p. e1006168 [PMID:27398935]
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