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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g10830 | ||||||||
Common Name | GSCOC_T00024196001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | TALE | ||||||||
Protein Properties | Length: 857aa MW: 93889.5 Da PI: 7.3787 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.8 | 4.2e-09 | 667 | 699 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LA+++gL+ +qV++WF N R + Cc01_g10830 667 HPYPTDADKHMLATQTGLSRNQVSNWFINARVR 699 89*****************************87 PP | |||||||
2 | BELL | 102 | 4.5e-33 | 521 | 586 | 7 | 72 |
BELL 7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +kkakLl +leeV++rYk+y++q+q+v+ssFe vagl +a+p++s Alk+++rhFrc+++ai++q+ Cc01_g10830 521 QKKAKLLYMLEEVCRRYKHYHQQMQMVVSSFESVAGLTAATPFISQALKTVARHFRCIRNAISDQL 586 79*************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.0E-44 | 423 | 584 | IPR006563 | POX domain |
Pfam | PF07526 | 2.8E-39 | 428 | 583 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.742 | 640 | 703 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.24E-11 | 643 | 704 | No hit | No description |
SMART | SM00389 | 4.5E-9 | 643 | 707 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 645 | 709 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 646 | 707 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.5E-18 | 660 | 699 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 857 aa Download sequence Send to blast |
METGNFRPEL HVAQQSRRDK LRVQHHPNPC NQNVEVYANQ LVPFSTHEGL NPDLIQLRSI 60 RYGNLSYEPL VFSSEMLDFS TNSQALLAHS NKDVTMLHQE SKRIAGDVED PSTNLSNTLP 120 SNVNSSAKVS GDPQNCSTWK SIGSQESCDW ITNYTSGSAG GIDSNHNPIF VGGGLSGSLK 180 ANNNNPSTST IYFNKPSSSY GNHHEVRSSL TSPPGEISSR NSPKNHVGHG HFNSPSVYHT 240 ANTFQEVSSA TIMTQELGVA AIAQQHSKEI AHVSWPNGGN ELVLLPAYAD HSNPLGLKHG 300 SGECRRWNGE LEYCASTKNA AERDHRSIAN DSPNTQALSL SLSSVPLSKS YACQTGERIM 360 SEDLHSGAGC FSNIQEIKAL KSDYHCFDSK PSYHGKVLES AQHDMVGNPT FAHRAAGPLG 420 PFTGYATILK SSKFLKPAQQ LLDDFCNVFG PKCTKMPEPP ERISAEIRAC DDAVNANESI 480 IGALAGDSGG SSSTFYSSNE KTQDHGGLSS PTESYRPDYL QKKAKLLYML EEVCRRYKHY 540 HQQMQMVVSS FESVAGLTAA TPFISQALKT VARHFRCIRN AISDQLKNVR KALGEDLASP 600 TTGTSSSKGD ICTSRLKLMD QTFQKQKVVG GNVGFFEPQQ HVWRPQRGLP ERAVAILRAW 660 LFDHFLHPYP TDADKHMLAT QTGLSRNQVS NWFINARVRV WKPMVEEIHT LETKGIAETG 720 ASVGKTDGKA MTESVSRSND SQPLNRLNAG RSSEKQVECS DVGSSVYMGS RMNDDTWNQK 780 RSRVECHVPG SMDGSLVGFV PYQQSGIEIG GLGAVSLTLG LRQNADGVQP QHPLQQQHEN 840 QLRRHFGDQI IYDFVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 9e-16 | 649 | 707 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 9e-16 | 649 | 707 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 7e-16 | 649 | 706 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-16 | 649 | 706 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 9e-16 | 649 | 707 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 9e-16 | 649 | 707 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101166.1 | 0.0 | uncharacterized protein LOC113720656 | ||||
Refseq | XP_027101167.1 | 0.0 | uncharacterized protein LOC113720656 | ||||
Refseq | XP_027101168.1 | 0.0 | uncharacterized protein LOC113720656 | ||||
TrEMBL | A0A068UHG5 | 0.0 | A0A068UHG5_COFCA; Uncharacterized protein | ||||
STRING | VIT_06s0004g02580.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8720 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 3e-91 | BEL1-like homeodomain 8 |