![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc01_g08720 | ||||||||
Common Name | GSCOC_T00023906001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 35873.3 Da PI: 8.8047 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.3 | 1.2e-09 | 292 | 327 | 93 | 128 |
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++ +g+k+t vf++grapkg++t+W+mh y + Cc01_g08720 292 IKSGSTIIGTKRTSVFHNGRAPKGKRTEWIMHKYCM 327 5558889***************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.720 | 6.7E-77 | 9 | 260 | IPR016040 | NAD(P)-binding domain |
CDD | cd05326 | 1.33E-114 | 13 | 258 | No hit | No description |
SuperFamily | SSF51735 | 9.34E-74 | 15 | 260 | IPR016040 | NAD(P)-binding domain |
PRINTS | PR00081 | 9.6E-36 | 18 | 35 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
Pfam | PF13561 | 6.9E-67 | 23 | 258 | No hit | No description |
PRINTS | PR00080 | 1.9E-10 | 90 | 101 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
PRINTS | PR00081 | 9.6E-36 | 90 | 101 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
PRINTS | PR00081 | 9.6E-36 | 139 | 155 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
PRINTS | PR00080 | 1.9E-10 | 145 | 153 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
PRINTS | PR00080 | 1.9E-10 | 165 | 184 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
PRINTS | PR00081 | 9.6E-36 | 165 | 184 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
PRINTS | PR00081 | 9.6E-36 | 186 | 203 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
PRINTS | PR00081 | 9.6E-36 | 221 | 241 | IPR002347 | Short-chain dehydrogenase/reductase SDR |
SuperFamily | SSF101941 | 2.35E-9 | 291 | 332 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MANMAIASNI MKRLQGKVAL ITGGASGIGE STARLFVKHG AKVVIADIQD DLAKKVCQDL 60 DPSSASHVHC DTTQESDIEN AVNTAVSKYG KLDIMFNNAG IAGSGTSNIL DDKKSGFERV 120 ISVNLVGVFL GAKHAARVMI PNRCGSIINT ASVCSTIVGA APHAYVSSKH AVVGLTRNTA 180 VDLGRYGIRV NCLSPYFVPT PMAVDFIERI NGGVSKVYTY LDGAVLKADD VADAALYLAS 240 DDSKYVSGHN LVVDGGYSIV NSAMCSTLMI SGNLHVAVYS RFVCHEECGL IIKSGSTIIG 300 TKRTSVFHNG RAPKGKRTEW IMHKYCMSGK SQVKWCF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2bgk_A | 3e-75 | 1 | 268 | 1 | 273 | RHIZOME SECOISOLARICIRESINOL DEHYDROGENASE |
2bgk_B | 3e-75 | 1 | 268 | 1 | 273 | RHIZOME SECOISOLARICIRESINOL DEHYDROGENASE |
2bgl_A | 3e-75 | 1 | 268 | 1 | 273 | RHIZOME SECOISOLARICIRESINOL DEHYDROGENASE |
2bgm_A | 3e-75 | 1 | 268 | 1 | 273 | RHIZOME SECOISOLARICIRESINOL DEHYDROGENASE |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Oxidoreductase involved in lignan biosynthesis. Catalyzes the stereospecific conversion of (-)-secoisolariciresinol to (-)-matairesinol via a lactol intermediate. {ECO:0000269|PubMed:11278426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027125289.1 | 0.0 | secoisolariciresinol dehydrogenase-like | ||||
Swissprot | Q94KL7 | 2e-99 | SILD_FORIN; Secoisolariciresinol dehydrogenase (Fragment) | ||||
TrEMBL | A0A068UF10 | 0.0 | A0A068UF10_COFCA; Uncharacterized protein | ||||
STRING | EMJ07569 | 1e-128 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44290.1 | 1e-14 | NAC domain containing protein 60 |
Publications ? help Back to Top | |||
---|---|---|---|
|