PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g06930
Common NameGSCOC_T00030103001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 790aa    MW: 87350.8 Da    PI: 6.8077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g06930genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017122141221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                   C++Cgk F+++ +L  H+r
  Cc01_g06930 122 ICSICGKDFPSRKSLFGHMR 141
                  5******************8 PP
2zf-C2H212.30.0005354376123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k+Fs++  L  H ++H
  Cc01_g06930 354 FRCSTCDKTFSSHQALGGHRSSH 376
                  89**************9999998 PP
3zf-C2H212.30.0005642664123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k+Fs++  L  H ++H
  Cc01_g06930 642 FRCSTCDKTFSSHQALGGHRSSH 664
                  89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.74E-66488No hitNo description
PROSITE profilePS501579.916694IPR007087Zinc finger, C2H2
SMARTSM003550.336689IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-76689IPR007087Zinc finger, C2H2
PROSITE patternPS0002806889IPR007087Zinc finger, C2H2
SuperFamilySSF576671.74E-6116143No hitNo description
SMARTSM003550.0024121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18121148IPR007087Zinc finger, C2H2
PfamPF139121.9E-7122145IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576674.07E-8353376No hitNo description
SMARTSM003550.027354376IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074354381IPR007087Zinc finger, C2H2
PfamPF139122.2E-8354377IPR007087Zinc finger, C2H2
PROSITE patternPS000280356376IPR007087Zinc finger, C2H2
SuperFamilySSF576674.07E-8422449No hitNo description
PROSITE profilePS501579.349427449IPR007087Zinc finger, C2H2
SMARTSM003550.18427449IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-13427451IPR007087Zinc finger, C2H2
PROSITE patternPS000280429449IPR007087Zinc finger, C2H2
SuperFamilySSF576674.58E-8641664No hitNo description
SMARTSM003550.027642664IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-8642665IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.074642669IPR007087Zinc finger, C2H2
PROSITE patternPS000280644664IPR007087Zinc finger, C2H2
SuperFamilySSF576674.58E-8710737No hitNo description
PROSITE profilePS501579.349715737IPR007087Zinc finger, C2H2
SMARTSM003550.18715737IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-13715739IPR007087Zinc finger, C2H2
PROSITE patternPS000280717737IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MEENKNSNLG KEKQSRLVEE EKNHHESKTN PVSMDGKLLV KLKFPKGAEE TEEGAEVVVS  60
PVKKSHFCHE CNKGFSSGKA LGGHMSSAHV QARENLKKLK FNKSVKFKRD GSSSDAAARE  120
TICSICGKDF PSRKSLFGHM RCHPDREWRG MEPPKEQGKI PREHPQSLSI LDDDDDEEEE  180
AEEEESLETD NQADYHVHVA ADNVAISTVA AEVVDLTRSL SSWSVKGKRG RECPRVLLDS  240
YPYCEEEEQK IQDAVDQLIS LAYKQNKHDG SSTRRGQIKE GRNSASGLKK KRVDDPMELE  300
KQNHCFYDDC KKGNVGVKNK RRGPKTTPKN SETEVELTPL DQKLDGEEST PEKFRCSTCD  360
KTFSSHQALG GHRSSHNKFK ATVQNTADGS SPFPFGHENR ANPVSQTAVE NDEIKGVEAS  420
KFAENIHECT LCKKTFPSGQ ALGGHKRCHW QGLSSQVASP EAEEPRPLVR KGLQFDLNEP  480
AEEEDANASD LGNSIAEVVD LTRSMSSWSV KGKRGGECPR VLLDTYSEEE EQKILDAVDQ  540
LISLAHKQII HDGSSTRRGQ IKEARNGASG LKKKRVDDQV HPARVRRDYP VKKRQFSEIA  600
TDSEETLDGL LDKGKRKDPM KPESGVEISP SSQSRHTVIE KFRCSTCDKT FSSHQALGGH  660
RSSHNKFKAT VQNTANGSSP FPSGHENRAK PVSQTAAEND EIKGVEASKF AENIHECTLC  720
KKTFPSGQAL GGHKRCHWQG LSSQIASPEA EEPRPLVRKG LQFDLNEPAE EENANTSDLG  780
NSSGDASCS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027124054.10.0uncharacterized protein LOC113740720
TrEMBLA0A068UN470.0A0A068UN47_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-19C2H2-like zinc finger protein