PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g06650
Common NameGSCOC_T00030062001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 545aa    MW: 61741.7 Da    PI: 6.563
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g06650genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS77.91.9e-2427234876152
         GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspes 152
                  + l+a++++  ++P+ ++s++ a + I + ++g++++HiiDf+i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++
  Cc01_g06650 272 DILKAYQAYILACPFKRMSNIFADKSIGRLTKGARCLHIIDFGIAYGFQWPCLIQGLSLRPGGPPKLRITGIDLPQP 348
                  57899*******************************************************************99875 PP
2GRAS176.52e-54349540183374
         GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                  akr+e+++le+L++ +gE+++Vn+ ++l +++de+++ + +rd+vL+l+k+++P+ +v+   +  +n + F++rf eal+++s+lfd+le+++p+ ++
  Cc01_g06650 349 AKRWETIQLEDLKIGKGETIVVNCLYRLRHIPDETAEGSTARDDVLNLIKKINPDFFVHGVTNGTYNVPFFVTRFREALHHFSSLFDMLEKTVPQSDQ 446
                  589*********************************************************************************************** PP

         GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +r+  E+e+lgr+ +nv+aceg++r+er et+++W+ r ++aGF+++pl+++++ ++++ ++  + + + v+e+ +++++gWk+r  +++S+W+
  Cc01_g06650 447 DRMLFEKEVLGRDSMNVIACEGSQRIERPETYKQWHVRNQRAGFSQLPLNQDIVREVRAKVKLQYHKDFLVDEDGHWILQGWKGRVFYALSCWK 540
                  *****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.344179520IPR005202Transcription factor GRAS
PfamPF035146.5E-22272348IPR005202Transcription factor GRAS
PfamPF035146.8E-52349540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQRNCLMEFK YNCQSISASL EKNLAFECGI GSTCNFDVAG HSPSVGSSFP VNAAAQPEGD  60
SSLPVDHFDG VFKYLNQMLM EEDLEQRPCM YQDLLALQAA EKSFHDALTG ADFNVVANKE  120
EKKRDDFDNG SRRRRNHDRE DSEHGEGRSS KLFASHNEAG MPENEAAEEM YDKALLCPKR  180
NPGFYDDSST CDSDDPTPES KGWNYQKVGI KPESKRGRPR AGEKKINIRE LVDLSSLLTQ  240
SAQAVAEYDN KTAQELLNRI REHSSPCVSA GDILKAYQAY ILACPFKRMS NIFADKSIGR  300
LTKGARCLHI IDFGIAYGFQ WPCLIQGLSL RPGGPPKLRI TGIDLPQPAK RWETIQLEDL  360
KIGKGETIVV NCLYRLRHIP DETAEGSTAR DDVLNLIKKI NPDFFVHGVT NGTYNVPFFV  420
TRFREALHHF SSLFDMLEKT VPQSDQDRML FEKEVLGRDS MNVIACEGSQ RIERPETYKQ  480
WHVRNQRAGF SQLPLNQDIV REVRAKVKLQ YHKDFLVDED GHWILQGWKG RVFYALSCWK  540
PIQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2422854142380Protein SCARECROW
5b3h_A5e-2422854141379Protein SCARECROW
5b3h_D5e-2422854141379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103396.10.0scarecrow-like protein 14
TrEMBLA0A068UN420.0A0A068UN42_COFCA; Uncharacterized protein
STRINGMigut.D02077.1.p1e-180(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-130GRAS family protein