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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g06640 | ||||||||
Common Name | GSCOC_T00030060001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 681aa MW: 76979.4 Da PI: 5.0409 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 375.9 | 5.2e-115 | 305 | 676 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+a + d+ a++lL+++++++sp+gdp++Rla++f++AL+ar+a+++ ly+al++++t+ +++l a++++ e++P+ ++s+ a Cc01_g06640 305 LRDLLTRCAQAAAGYDNWIANELLKQIRQHSSPYGDPTERLAHCFANALEARIAGTGAALYSALTAKRTP---AADVLRAYQAYMEICPFQRMSNAFA 399 6899*************************************************************99999...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N+ I + +++ +r+HiiDf+i +G+QWp+++q ++ Rp+gpp+lRiTg++ p++g +e++eetg+rL+++A+++ vpfefn+ +akr++++++e+L Cc01_g06640 400 NKSIGRLTSKVTRIHIIDFGILYGFQWPCFIQGISLRPGGPPKLRITGIDLPQPGfrPAERIEETGRRLENYAKRFSVPFEFNA-IAKRWDTITTEDL 496 ******************************************************9*****************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 v+++E l+Vn+ ++l +++de+v +s+rd+v++l+++++P+++v+ + ++++ Fl+rf eal+++s+lfd++ea+lpre+ +r++ Ere++gr Cc01_g06640 497 VVDKDEILVVNCLYRLRNVPDETVVPSSPRDAVMNLIRKINPDIFVHGILNGMYSAPFFLTRFKEALYHFSSLFDMFEATLPREDLNRSMFEREVIGR 594 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+aceg+er+er et+++W+ r ++aGF+++pl++++ ++++ ++ ++ + v+e+s+++++gWk+r ++++ +W+ Cc01_g06640 595 EVMNVIACEGTERVERPETYKQWQVRNQRAGFRQLPLNKEIIREVRAKVKSSYNGHFLVDEDSDWMLQGWKGRVIYALACWK 676 *****************************************************777*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.025 | 279 | 656 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-112 | 305 | 676 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MDTLFRADGY SNFGSEFLQP DFDSQDSLSE GNLVNDCQFD HLLNNVSGPS TFSSLPDDIS 60 ATQCELEDCT VERDYFDGVF KYLQQMLMDE EDLVDKHCML QDCLAFQSAE KSFYEVLNEN 120 HPSSLGSSPS ALDNSAEIWP NEVNDPVVSH HTFQSNFQLT TPAESSDLSV HYLVDPCLSP 180 SQTLQSSTER NGTVVAAGEK SSNDRSKKKN TRRDPEGGDQ DKDERPSKQL ASHTDEIDNI 240 EDYDDALLCP ARNPNFYGES PARGGTECPE IEGRKKQQYV PPTTAKRGRP RASQKQDSIR 300 EVVDLRDLLT RCAQAAAGYD NWIANELLKQ IRQHSSPYGD PTERLAHCFA NALEARIAGT 360 GAALYSALTA KRTPAADVLR AYQAYMEICP FQRMSNAFAN KSIGRLTSKV TRIHIIDFGI 420 LYGFQWPCFI QGISLRPGGP PKLRITGIDL PQPGFRPAER IEETGRRLEN YAKRFSVPFE 480 FNAIAKRWDT ITTEDLVVDK DEILVVNCLY RLRNVPDETV VPSSPRDAVM NLIRKINPDI 540 FVHGILNGMY SAPFFLTRFK EALYHFSSLF DMFEATLPRE DLNRSMFERE VIGREVMNVI 600 ACEGTERVER PETYKQWQVR NQRAGFRQLP LNKEIIREVR AKVKSSYNGH FLVDEDSDWM 660 LQGWKGRVIY ALACWKPAGL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-50 | 294 | 677 | 10 | 380 | Protein SCARECROW |
5b3h_A | 1e-49 | 294 | 677 | 9 | 379 | Protein SCARECROW |
5b3h_D | 1e-49 | 294 | 677 | 9 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027103389.1 | 0.0 | scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 1e-173 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A068UPY0 | 0.0 | A0A068UPY0_COFCA; Uncharacterized protein | ||||
STRING | Migut.D02077.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-177 | GRAS family protein |
Publications ? help Back to Top | |||
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