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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g04590 | ||||||||
Common Name | GSCOC_T00041199001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 39741 Da PI: 6.0647 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116.8 | 2.1e-36 | 60 | 185 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 ppG+rF P d+el+v+yLkkk+ +++l+ + i++v++y + P L + + a+ +wyfF++r+k+++ ++r+ r + sg+Wk tg+d ++ k++ Cc01_g04590 60 PPGYRFCPWDSELIVDYLKKKILEEPLPR-NQIRDVNVYLHSPDILTeRYTPAGLGQWYFFTQREKNNEYSSRQYREAGSGFWKVTGEDSAIQL-KDT 155 9**************************99.77**************9345555666**************************************.889 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg kk vfy+g+ p g+kt+W+m+eyr+ Cc01_g04590 156 VVGFKKAWVFYEGKVPVGRKTNWTMQEYRV 185 9***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-43 | 57 | 212 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.092 | 59 | 212 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-21 | 60 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDVDEQQQQQ QGVDQSYVNK CQEQVRPFLA ALDINPGDMD GNSQFTDQEG FEESYFDSFP 60 PGYRFCPWDS ELIVDYLKKK ILEEPLPRNQ IRDVNVYLHS PDILTERYTP AGLGQWYFFT 120 QREKNNEYSS RQYREAGSGF WKVTGEDSAI QLKDTVVGFK KAWVFYEGKV PVGRKTNWTM 180 QEYRVNESPR QESASSTGTA LHDFVLCRIY KTKPENSNKS RGSQISQTQM RGQILEQPTQ 240 EGTVIYLQNG YTPIHPCIRT SSSRPVNYLG GMNSIGLPEN HRVSANSVTF TNQANRSGQL 300 IADGASTSTQ IRPMILTFPS RTDFMAERFQ QADGSQGNVQ TTLQNRHSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-34 | 58 | 211 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-34 | 58 | 211 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-34 | 58 | 211 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-34 | 58 | 211 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-34 | 58 | 211 | 19 | 167 | NAC domain-containing protein 19 |
3swm_B | 4e-34 | 58 | 211 | 19 | 167 | NAC domain-containing protein 19 |
3swm_C | 4e-34 | 58 | 211 | 19 | 167 | NAC domain-containing protein 19 |
3swm_D | 4e-34 | 58 | 211 | 19 | 167 | NAC domain-containing protein 19 |
3swp_A | 4e-34 | 58 | 211 | 19 | 167 | NAC domain-containing protein 19 |
3swp_B | 4e-34 | 58 | 211 | 19 | 167 | NAC domain-containing protein 19 |
3swp_C | 4e-34 | 58 | 211 | 19 | 167 | NAC domain-containing protein 19 |
3swp_D | 4e-34 | 58 | 211 | 19 | 167 | NAC domain-containing protein 19 |
4dul_A | 3e-34 | 58 | 211 | 16 | 164 | NAC domain-containing protein 19 |
4dul_B | 3e-34 | 58 | 211 | 16 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027067305.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Refseq | XP_027122336.1 | 0.0 | NAC domain-containing protein 2-like | ||||
TrEMBL | A0A068V419 | 0.0 | A0A068V419_COFCA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 3e-40 | NAC domain containing protein 47 |