PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 579aa MW: 65973.8 Da PI: 7.8034

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g04300	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353	4.5e-108	196	559	1	367
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +++lL++cA+ +s+ d++ a++lL+++++++sp+gd ++Rla+yf+ AL+ar++++++++y a++++ ++ +++l+a++++ +sP+ k+s++++ Cc01_g04300 196 MRSLLTQCAQSISDFDNRTANQLLNQIRQHSSPHGDGNERLAHYFADALEARVSGMGTTMYTAFSTRVSA----ADTLKAYQAYILASPFRKMSNILT 289 5799*******************************************************999999986....99****************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 ++I + + +++++HiiDf+i +G++Wp+++qaL++Rp+gpp+l iTg++ p++g +e++eetg+rLa+++++++vpfe+++ +a+++e+++leeL Cc01_g04300 290 GKTIQKLTTEASQIHIIDFGILYGFHWPCFIQALSKRPRGPPKLCITGIDLPQPGlrPAERVEETGRRLAHYCKKFNVPFEYHA-IARKWETISLEEL 386 ********************************************************************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++++ E+++ + ++l +++de+ ++s+rd+vL+l+k+++P+++v+ + +n++ F+ rf eal+++s+lfd+++++lpr++++r + E+e+lgr Cc01_g04300 387 KIDRSETVIATCLYRLRNVPDETSVTSSARDTVLHLIKKINPDLFVHGILNGTYNAPFFVMRFREALHHFSSLFDMFDKTLPRHDQDRLVFEKEVLGR 484 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 + +nv+aceg++r+er et+++W++r e+aGF+++pl+++++k++++ ++ + + + v+e+ +++++gWk+r L Cc01_g04300 485 QSMNVIACEGTARIERPETYKQWQARNERAGFRQIPLNKDIVKEVRAKVKLQYHKDFLVDEDGKWILQGWKGRIL 559 *************************************************888**************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.697	170	546	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-105	196	559	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MAGFEYDFPS ITSSGPLNLS NFPVDALPGE HDGDSSLPGD TFGAVLQYLN QMLMGEDLEQ 60 RPCMYQELSA LQAAEKSFYD ALTGVEIIKV ADEKEKERDK FTNGSAKKRN HYRQDDEHVE 120 AGRATKQFAS YAEEPTEIFD EALLCSSSNA GSWDLSYCEA KPGRRNNQQI GLTQEPKRGR 180 PRASERKLNI REVVDMRSLL TQCAQSISDF DNRTANQLLN QIRQHSSPHG DGNERLAHYF 240 ADALEARVSG MGTTMYTAFS TRVSAADTLK AYQAYILASP FRKMSNILTG KTIQKLTTEA 300 SQIHIIDFGI LYGFHWPCFI QALSKRPRGP PKLCITGIDL PQPGLRPAER VEETGRRLAH 360 YCKKFNVPFE YHAIARKWET ISLEELKIDR SETVIATCLY RLRNVPDETS VTSSARDTVL 420 HLIKKINPDL FVHGILNGTY NAPFFVMRFR EALHHFSSLF DMFDKTLPRH DQDRLVFEKE 480 VLGRQSMNVI ACEGTARIER PETYKQWQAR NERAGFRQIP LNKDIVKEVR AKVKLQYHKD 540 FLVDEDGKWI LQGWKGRILQ GWKGIVFDAL SRWNFVQE*

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MAGFEYDFPS ITSSGPLNLS NFPVDALPGE HDGDSSLPGD TFGAVLQYLN QMLMGEDLEQ  60
RPCMYQELSA LQAAEKSFYD ALTGVEIIKV ADEKEKERDK FTNGSAKKRN HYRQDDEHVE  120
AGRATKQFAS YAEEPTEIFD EALLCSSSNA GSWDLSYCEA KPGRRNNQQI GLTQEPKRGR  180
PRASERKLNI REVVDMRSLL TQCAQSISDF DNRTANQLLN QIRQHSSPHG DGNERLAHYF  240
ADALEARVSG MGTTMYTAFS TRVSAADTLK AYQAYILASP FRKMSNILTG KTIQKLTTEA  300
SQIHIIDFGI LYGFHWPCFI QALSKRPRGP PKLCITGIDL PQPGLRPAER VEETGRRLAH  360
YCKKFNVPFE YHAIARKWET ISLEELKIDR SETVIATCLY RLRNVPDETS VTSSARDTVL  420
HLIKKINPDL FVHGILNGTY NAPFFVMRFR EALHHFSSLF DMFDKTLPRH DQDRLVFEKE  480
VLGRQSMNVI ACEGTARIER PETYKQWQAR NERAGFRQIP LNKDIVKEVR AKVKLQYHKD  540
FLVDEDGKWI LQGWKGRILQ GWKGIVFDAL SRWNFVQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-43	202	555	25	368	Protein SCARECROW
5b3h_A	1e-43	202	555	24	367	Protein SCARECROW
5b3h_D	1e-43	202	555	24	367	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027096365.1	0.0	scarecrow-like protein 30 isoform X1
Swissprot	Q9XE58	1e-163	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A068V2I6	0.0	A0A068V2I6_COFCA; Uncharacterized protein
STRING	Migut.D02076.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.1	1e-165	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]