PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g04290
Common NameGSCOC_T00039312001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 726aa    MW: 81770.9 Da    PI: 4.775
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g04290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS42.11.4e-13383451270
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 
                    lLl+cA+ v ++d + a+  L+ ++++a ++gdp qRla  f++AL+arla++++ely+++++++ s
  Cc01_g04290 383 SALLLNCAHSVVADDRRTANDQLKLIKQHACSTGDPQQRLAILFANALEARLAGNGPELYATVKSKRRS 451
                  579**********************************************************99888765 PP
2GRAS260.84.7e-80452722105373
         GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                  a+e+++++Hi+Df+i++G+QWp+L+q+L++R++gpp+lRiTg++ p++g   +e++eetg rLak++e+++vpf ++++  k++e+++leeL++ ++E
  Cc01_g04290 452 AAEEAKTLHIVDFGIGYGFQWPSLIQQLSNRDGGPPKLRITGIEYPKPGfrPAERIEETGCRLAKYCERFNVPFVYQAIPIKNWEKIRLEELKLTRDE 549
                  77899*******************************************9************************************************* PP

         GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                  +++Vn++l+ +++ld+ v+ + +rd+vL+l+++++P ++v      ++ ++ Fl+r  eal ++sa+fd l+ +lp+++++r k E+e++g e++n++
  Cc01_g04290 550 VIVVNCQLRFKNMLDQVVDGDCPRDAVLRLIREINPAIFVSDVLSGQLCTPFFLTRCREALFFFSAVFDFLHHNLPPDDKQRLKFEQEFMGTEVMNII 647
                  ************************************************************************************************** PP

         GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  aceg+er+er et+++W+ r ++aGFk +pl+++  k+ ++ +++ + + +  +ee g++++gWk++ ++++S+W
  Cc01_g04290 648 ACEGSERVERAETYKQWQIRYKRAGFKMLPLNQDLKKELRSKVKEGYHKDFLFDEEGGWILQGWKGKIITACSCW 722
                  *********************************************99888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.325356703IPR005202Transcription factor GRAS
PfamPF035144.8E-11383451IPR005202Transcription factor GRAS
PfamPF035141.6E-77452722IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MTINRIMDHQ FPNLVNSVND SEFGNGINLA SSEQSNLDIE FEKFWNSVNG FEFNSSVVFP  60
SFEQQPLSSC TFAPLYNVSS EVDFPGDYES YPMLKYINQM LMEDFSEEQP NISPDPLALK  120
AAEKSLYHVL GKSYPPPHEP VAALDQIAES SQESTDSCSQ HYTDGCDTDT STIDSQPILD  180
PVESSGKGHQ PWDKYFKSSF QTSSLDSVHS LSSSSNSGDG LIGFLTNENM ISSSVSDSDT  240
ILQFKKGLEE GNKFLPAGKL MNIDLDKYTL PSKLQDVGLV TTGKKDEEYL RTGMRGRKHQ  300
HQDDGDAHLG RKYKQSAVSM EEVELSEAFD RILLFGDSRG QDLCCNVDVE QPTELSEALD  360
HESDVSKSTE ERQGTDNEAL DLSALLLNCA HSVVADDRRT ANDQLKLIKQ HACSTGDPQQ  420
RLAILFANAL EARLAGNGPE LYATVKSKRR SAAEEAKTLH IVDFGIGYGF QWPSLIQQLS  480
NRDGGPPKLR ITGIEYPKPG FRPAERIEET GCRLAKYCER FNVPFVYQAI PIKNWEKIRL  540
EELKLTRDEV IVVNCQLRFK NMLDQVVDGD CPRDAVLRLI REINPAIFVS DVLSGQLCTP  600
FFLTRCREAL FFFSAVFDFL HHNLPPDDKQ RLKFEQEFMG TEVMNIIACE GSERVERAET  660
YKQWQIRYKR AGFKMLPLNQ DLKKELRSKV KEGYHKDFLF DEEGGWILQG WKGKIITACS  720
CWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-293867228374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096278.10.0scarecrow-like protein 33
TrEMBLA0A068V0L90.0A0A068V0L9_COFCA; Uncharacterized protein
STRINGXP_009606498.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-168SCARECROW-like 14