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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g04280 | ||||||||
Common Name | GSCOC_T00039310001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 1361aa MW: 153753 Da PI: 6.2824 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 328.7 | 1.1e-100 | 275 | 639 | 4 | 370 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 lL++cA++v+++d++ a++ L+++++++s gdp qRla+ +++AL+arla+++ l al++++ s ++++l+a++++ +sP+ + aN++ Cc01_g04280 275 LLISCAQFVAADDHRTATEKLKQIRQHVSCLGDPHQRLAFILVNALEARLAGTGRDLHVALTSKRIS---TADQLKAYRVYL-CSPLRPTFSFFANEM 368 8***************************************************999999888888887...899999999865.99**999999***** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 Ilea+++++ +Hi+Df+i+ G+QWp+L+q+L++R++gpp+lRiTg++ p++g +e++++tg+rLak++++++vpfe++++++++++++++eeL++ Cc01_g04280 369 ILEAASRATILHIVDFGITFGFQWPTLIQQLSNRDGGPPKLRITGIDFPQPGfrPAESMQQTGHRLAKYCARFNVPFEYQAIATRNWDKITIEELKLT 466 ***************************************************9*****************************9999************* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 ++E+laV +++ l+++ d+ v+ e +rd+vL+l++ ++P+++v a+++++ Fl+rf +al+++ ++fd+++++lpr++ +r+k E+e+lg ++ Cc01_g04280 467 RNEVLAVACQFGLKNISDDMVEGECPRDAVLSLIRAMNPDILVTDVLSAQLSGPFFLTRFRDALSFFFTMFDAIDNNLPRKDAQRRKFEQEFLGTQLL 564 ************************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 n+vaceg +r+er+et++kW++r ++aGF+++pl+++ k+ + ++k + + ++++e+ +l++gWk++ +++v Cc01_g04280 565 NIVACEGLARVERCETYRKWHARYNRAGFRQLPLNQDLLKELRGKVKKAYHKDFMLDEDGCWLLQGWKGKIIIMV 639 **************************************************888****************998875 PP | |||||||
2 | GRAS | 351.6 | 1.3e-107 | 988 | 1357 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + L++cA++v+s+d++ a++ L+ l+++as +gdp qRla+ f++AL+arla++++ l +al++++ + +seel+al++f +sP+ ++ + Cc01_g04280 988 IAMLISCAQFVASDDHSTANEQLKLLRQHASRSGDPHQRLAFIFVNALEARLAGNGHDLHAALTSKPMA---TSEELKALRVFL-CSPFRQIYAFF 1079 678*********************************************************999999998...89999**99997.9********** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 aN++Ilea+++++++Hi+Df+i+ G+QWp+L+q L+++++gpp+lRiTg++ p++g ++++e+tg+rLak++++++vpfe+++++++++e++++ Cc01_g04280 1080 ANKMILEAASNATTLHIVDFGITFGFQWPNLIQRLSKKDGGPPKLRITGINFPQPGlrPATKIEQTGHRLAKYCKRFNVPFEYQAIATRNWEKITI 1175 *********************************************************9***************************9999******* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 eeL++k++E+laV +++ +++lde v e +rd++L+l+++++P+++v a+++++ Fl rf eal ++s++fd l+++lpr++ +r+k E+ Cc01_g04280 1176 EELKLKRNEVLAVVFQFDSKNILDELVGNECPRDAILSLIRTMNPDILVTEVLSAQLSGPFFLSRFREALFFFSTIFDVLDNNLPRKDGQRMKFEQ 1271 ************************************************************************************************ PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e+lg ei n+vaceg +r+er+et+++W++r ++aGF+++pl+++ +k+ ++ ++ + + ++ +e+ +l++gWk++ + ++S+W Cc01_g04280 1272 EFLGTEIFNIVACEGLARVERCETYKQWQARYKRAGFRQLPLNQDLMKELRSKTKEGYHKDFMFDEDGCWLLQGWKGKVICACSSW 1357 ********************************************************99888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.616 | 246 | 623 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-98 | 275 | 639 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 58.683 | 961 | 1338 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-105 | 988 | 1357 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 1361 aa Download sequence Send to blast |
MLMEENLEEQ QSMSTDPLAL QAAEKSLYEI LGKNYPHSPR ATFVTALENN AHTPDGFSES 60 SSNHVTNCSD SGSNSAASWP IPELSELSGK QVQCLHMLKN STICGNGQVA SLTDENLIPS 120 FYSNHETMML FKKGLEEGKK FLPSGNQLIV DLDKHTLSLK LELLAEKKKD EVEKLAEISG 180 GRKHQNQDDD DSLGGRSNKQ SATSEEEVEL SELLDRVLLH ADSKGLEADS DVDVEQPNGS 240 FKTLSRSKFL HRSRVGMSPE KRLGAEGEAL DLFGLLISCA QFVAADDHRT ATEKLKQIRQ 300 HVSCLGDPHQ RLAFILVNAL EARLAGTGRD LHVALTSKRI STADQLKAYR VYLCSPLRPT 360 FSFFANEMIL EAASRATILH IVDFGITFGF QWPTLIQQLS NRDGGPPKLR ITGIDFPQPG 420 FRPAESMQQT GHRLAKYCAR FNVPFEYQAI ATRNWDKITI EELKLTRNEV LAVACQFGLK 480 NISDDMVEGE CPRDAVLSLI RAMNPDILVT DVLSAQLSGP FFLTRFRDAL SFFFTMFDAI 540 DNNLPRKDAQ RRKFEQEFLG TQLLNIVACE GLARVERCET YRKWHARYNR AGFRQLPLNQ 600 DLLKELRGKV KKAYHKDFML DEDGCWLLQG WKGKIIIMVY CFCKINGNQS EHFLEIKDWE 660 LRNILWRKLK LHKEFNFFFL NCVKKETDYQ GGTEGISFLE SLDPVNGFGF DGASVYASLR 720 SEDPSSYAPF YNMSSELDFP DEHEFYPVLK YINQMLMEEN VDEQPSMSHD PLAIQAAEKS 780 FYEILGENYS PSPLETSVAA LERNAQTPEG FSESSSKDSR NSSRSSTSAA PSPSSFQTNS 840 IESPPQLKNL TICGDGQVRS LTDKNLISCF YSDNRTMLQF KKGLEEGNKF LPTGNQLEEK 900 LNNGLQGRKH QYLDDSDSYI GRSNKQSALY EEDAELSETI ERALLYGDIK PSHGFSETLH 960 NDQLLHRSHV GKSQTERQVT DGGPFDLIAM LISCAQFVAS DDHSTANEQL KLLRQHASRS 1020 GDPHQRLAFI FVNALEARLA GNGHDLHAAL TSKPMATSEE LKALRVFLCS PFRQIYAFFA 1080 NKMILEAASN ATTLHIVDFG ITFGFQWPNL IQRLSKKDGG PPKLRITGIN FPQPGLRPAT 1140 KIEQTGHRLA KYCKRFNVPF EYQAIATRNW EKITIEELKL KRNEVLAVVF QFDSKNILDE 1200 LVGNECPRDA ILSLIRTMNP DILVTEVLSA QLSGPFFLSR FREALFFFST IFDVLDNNLP 1260 RKDGQRMKFE QEFLGTEIFN IVACEGLARV ERCETYKQWQ ARYKRAGFRQ LPLNQDLMKE 1320 LRSKTKEGYH KDFMFDEDGC WLLQGWKGKV ICACSSWVPA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-40 | 276 | 1357 | 4 | 374 | GRAS family transcription factor containing protein, expressed |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027173576.1 | 0.0 | scarecrow-like protein 14 isoform X2 | ||||
Refseq | XP_027179912.1 | 0.0 | scarecrow-like protein 14 isoform X2 | ||||
TrEMBL | A0A068V0B3 | 0.0 | A0A068V0B3_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-162 | SCARECROW-like 14 |