PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g35530
Common NameGSCOC_T00001313001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 404aa    MW: 44727.8 Da    PI: 5.0152
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g35530genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK62.29e-20234281552
       RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  i+ e+l+++   +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++
  Cc00_g35530 234 ITREVLEQNSTRKLEDAAKNIGVSRSTLKRICREYGINRWPPRKARKV 281
                  899*****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.97217301IPR003035RWP-RK domain
PfamPF020421.2E-16234281IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.605.9E-4240271IPR009057Homeodomain-like
CDDcd000930.00768246287No hitNo description
SuperFamilySSF542771.05E-14306398No hitNo description
Gene3DG3DSA:3.10.20.2401.8E-12312395No hitNo description
SMARTSM006668.5E-9314396IPR000270PB1 domain
PROSITE profilePS5174514.059314396IPR000270PB1 domain
PfamPF005646.1E-12315395IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
METLKEHLGS SFKIASGQEL GQKLTVEVIK VSPEDGFGSF EICSTTGIEC TPWLGEVQRG  60
EGMMQLDLSS QQVDAANGSM DGIHNQQNGS VGSTPRLAKA QGGEGMMQVD FSSQRVDTTN  120
ACINGVHGQQ NGIVGSPPRP EHTQGFDNIS YQELNLAGVD VAHNSTNGIY EQQNGIVRSS  180
TGQVLMQNMV SREHDEPIVE DPQRDGASIE QGDNEVTNLK VQKPSCTLKS DLGITREVLE  240
QNSTRKLEDA AKNIGVSRST LKRICREYGI NRWPPRKARK VSQALAVQKT VQPSMEDTHE  300
HHRSDATRLE DDNGMWVKAE YQGRMIKFRL PFSARNIDLE ENVVQRLNLA TGSFIIEYQD  360
EDDDRIWITC DGDLRTSMST LSSLGRTTIK MHIVEDIPNR RDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067002.10.0protein NLP9-like
RefseqXP_027067003.10.0protein NLP9-like
RefseqXP_027067004.10.0protein NLP9-like
RefseqXP_027067005.10.0protein NLP9-like
RefseqXP_027067006.10.0protein NLP9-like
RefseqXP_027067007.10.0protein NLP9-like
RefseqXP_027067008.10.0protein NLP9-like
RefseqXP_027067009.10.0protein NLP9-like
RefseqXP_027067010.10.0protein NLP9-like
RefseqXP_027067011.10.0protein NLP9-like
RefseqXP_027067012.10.0protein NLP9-like
RefseqXP_027067013.10.0protein NLP9-like
RefseqXP_027067014.10.0protein NLP9-like
RefseqXP_027067015.10.0protein NLP9-like
RefseqXP_027067016.10.0protein NLP9-like
TrEMBLA0A068VR880.0A0A068VR88_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4897426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.14e-14Nin-like family protein