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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cc00_g33210 |
| Common Name | GSCOC_T00013033001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
Trihelix |
| Protein Properties |
Length: 152aa MW: 16639.7 Da PI: 10.1493 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc00_g33210 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 42.5 | 1.7e-13 | 25 | 70 | 33 | 77 |
trihelix 33 evskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77
+ s+kmre+gf rsp++C++kw+nl k++kk+k++++++ ++++s
Cc00_g33210 25 WLSSKMREKGFDRSPTMCTDKWRNLLKEFKKLKQQDRGNnNCNNSG 70
589*******************************999874466554 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 152 aa
Download sequence Send
to blast |
MQWQTSRKSD GGGLAVAAGK WGSGWLSSKM REKGFDRSPT MCTDKWRNLL KEFKKLKQQD 60
RGNNNCNNSG SASSANKMWY YKELEELLRD RAKNGSYKSP PPPPPPPPPP SAKVEAYIHF 120
PDKGGLEDGS IPFGSVEGKG RGGNLELFGH V*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
