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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g31490 | ||||||||
Common Name | GSCOC_T00024832001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 218aa MW: 24413.1 Da PI: 10.4272 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.9e-06 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cc00_g31490 39 FVCEICNKGFQRDQNLQLHRRGH 61 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.12E-7 | 38 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-6 | 38 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 2.7E-5 | 39 | 61 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 39 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 80 | 110 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.5E-4 | 103 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.12E-7 | 110 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MIAAQVGPVK KKRNLPGMPD PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG 60 HNLPWKLRQR NGKEVKKRVY VCPEATCIHH DPSRALGDLT GIKKHFCRKH GEKKWKCERC 120 SKKYAVISDW KAHTKTCGTR EYRCDCGTLF SRRDSFITHR AFCNALAQES ARSQTQTLAI 180 TNEEGTLKVQ AQTTTTRTSS SSPPLPPLTP STGVLNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 111 | 172 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 111 | 172 | 3 | 64 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027093394.1 | 1e-162 | zinc finger protein ENHYDROUS-like | ||||
Refseq | XP_027147859.1 | 1e-160 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9LVQ7 | 1e-113 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
Swissprot | Q9SCQ6 | 1e-113 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A068UGC6 | 1e-159 | A0A068UGC6_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A068VQ13 | 1e-161 | A0A068VQ13_COFCA; Uncharacterized protein | ||||
STRING | Gorai.009G203800.1 | 1e-123 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-115 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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