PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g31390
Common NameGSCOC_T00012572001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 384aa    MW: 43841 Da    PI: 6.2701
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g31390genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix772.9e-2411111186
     trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                  +Wt+++v++Li ++ +++++++++               +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++d
  Cc00_g31390  11 KWTDNMVRLLIMVVFYIGDEVGSEGndpagkkkgaggvlQKKGKWKSVSRAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLD 108
                  7**************999999964336777789999999**********************************************55*********** PP

     trihelix  84 qle 86 
                   ++
  Cc00_g31390 109 TMD 111
                  998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-209137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MRKISPWQRM KWTDNMVRLL IMVVFYIGDE VGSEGNDPAG KKKGAGGVLQ KKGKWKSVSR  60
AMMERGFFVS PQQCEDKFND LNKRYKRVND ILGKGTACRV VENQSLLDTM DHLSAKIKEE  120
VKKLLSSKHL FFREMCAYHN SCGHGGTGGA SSSGAAQQST EVGGVEPSSQ MQQQQRCLHT  180
SENASTPPNL ARCEVEGSKT TKGRSFEEDN DEDDDDDDDE EEYEDDVVEG GGSGCEHGHP  240
EEDDDTPDER CARKRRRKGI FLSPLVQQMS TELVKVLQDE SKNSAEKRQW IKNRLLQLEE  300
RHVGFQSEAF ELEKQRLKWV KFSSKKEREM ERDKLSNDRL RLENERMMLL IRQKELELLD  360
VYQQQQQQQH QSSRKSDPSS ITG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069362.10.0uncharacterized protein LOC113694709 isoform X1
TrEMBLA0A068VQ040.0A0A068VQ04_COFCA; Uncharacterized protein
STRINGcassava4.1_006702m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.19e-70sequence-specific DNA binding transcription factors