PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g31280 | ||||||||
Common Name | GSCOC_T00006997001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 175aa MW: 19722.2 Da PI: 10.3998 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8.3e-10 | 16 | 64 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + Er+RR r++s++ eL +l+P+++++++++ls + L +++ YI +L Cc00_g31280 16 KTTERNRRIRMKSSILELISLVPQQFNPSKERLSPKDQLHRVTAYITQL 64 568*********************99999999***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.017 | 10 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-8 | 10 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-10 | 14 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-6 | 17 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.89E-4 | 19 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MESYNASDAT TKLDRKTTER NRRIRMKSSI LELISLVPQQ FNPSKERLSP KDQLHRVTAY 60 ITQLRERVEK LKKMKEMLIS KFNTSGIPGS GIPVVKITEI GSNLEVVLVT GLSKKFGLHE 120 VILVLHGQGV EVVSISISTM ADRIYHILHA QVKMPRIGVD TLIIYDRLQK LCLD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027122156.1 | 1e-124 | transcription factor bHLH162-like | ||||
TrEMBL | A0A068VMG4 | 1e-123 | A0A068VMG4_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0015s08580.1 | 4e-50 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6083 | 14 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-21 | bHLH family protein |