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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc00_g28360 |
Common Name | GSCOC_T00005593001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
HSF |
Protein Properties |
Length: 347aa MW: 37678.9 Da PI: 5.2904 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc00_g28360 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 114.8 | 5.6e-36 | 31 | 121 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y++++d++++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k ll++i+
Cc00_g28360 31 FLTKTYQLVDDRTIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKGLLCDIQ 118
9*****************************************************************99.........******************** PP
XXX CS
HSF_DNA-bind 99 rkk 101
r+k
Cc00_g28360 119 RRK 121
*98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010200 | Biological Process | response to chitin |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MAPPPVERNG GESTTTPPPP GDGPRSLPTP FLTKTYQLVD DRTIDDVISW NEDGSTFIVW 60 NPTEFARDLL PKYFKHNNFS SFVRQLNTYG FRKVVPDRWE FSNDCFRRGE KGLLCDIQRR 120 KLAAPPVAGA TISPVTVPTP TAAVSAIPPP RTVSPTDSGE EQVVSSTSSP SGFRETATAG 180 GSTAELIGEN ERLRKENMQL NKELSHMKSM CSNVYVLMSN YSNHSNGATA NSKAEGSSSQ 240 ALKALDLLPP KPIFDESGAT TECGGEDRMA VDEAGARIFG VSIGVKRGRE NGAAAAAEHD 300 KELQLQQPGT ADVKSEPIDD ENSNGDDQQT HWLRQCRIQN QRCVIK*
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