PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc00_g27610 | ||||||||
Common Name | GSCOC_T00003289001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 154aa MW: 17798.9 Da PI: 5.0725 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.7e-11 | 49 | 92 | 5 | 53 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + e Er+RR+++ + ++ Lr ++P+ + K++Ka+i + A+ YI++ Cc00_g27610 49 NIESERKRRQKLTETLHALRAVVPNiS------KMDKASIIKDAICYIQQ 92 5689*********************66......***************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.55E-16 | 44 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.545 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.98E-9 | 47 | 98 | No hit | No description |
Pfam | PF00010 | 1.4E-8 | 49 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-14 | 50 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-12 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 154 aa Download sequence Send to blast |
MDDMDVVYKY YWENMILQTE QLGRNFDESF SFYDSSSPDG AQSSAASKNI ESERKRRQKL 60 TETLHALRAV VPNISKMDKA SIIKDAICYI QQFHNQERMI QAEISELESK RSIFLDFDQE 120 ISYNSKPKRS RFEQTCDSAK SRSSPIEVFE VGL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 49 | 113 | 9 | 71 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 52 | 57 | ERKRRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027065577.1 | 9e-96 | transcription factor bHLH35-like isoform X1 | ||||
Swissprot | Q700E3 | 1e-33 | BH027_ARATH; Transcription factor bHLH27 | ||||
TrEMBL | A0A068VL50 | 1e-109 | A0A068VL50_COFCA; Uncharacterized protein | ||||
STRING | XP_008223870.1 | 2e-51 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29930.4 | 3e-32 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|