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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g26010 | ||||||||
Common Name | GSCOC_T00003989001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 153aa MW: 17939.7 Da PI: 10.1696 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.2 | 9.6e-38 | 1 | 123 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkg 97 +p+G+rF Ptdeel+v+yL+k++++ +l+l + i+e+++y ++P++L + + ++ + wyfF+ +ky++g+r++r + g+Wk tgkdk+++ +g Cc00_g26010 1 MPRGYRFCPTDEELIVHYLRKRIAKAPLPL-NRIHEANVYGHNPQELTSYF-HNVNGWYFFTYLTNKYPKGSRPSRsCGDGGFWKPTGKDKKIYY-NG 95 699***************************.77**************8544.5689********************666799*************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg +k+L f g+kt W mheyr+ Cc00_g26010 96 NTVGYRKSLDFLL---GPGQKTAWKMHEYRI 123 9***********5...45688********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.564 | 1 | 143 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.67E-42 | 1 | 128 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-21 | 2 | 123 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MPRGYRFCPT DEELIVHYLR KRIAKAPLPL NRIHEANVYG HNPQELTSYF HNVNGWYFFT 60 YLTNKYPKGS RPSRSCGDGG FWKPTGKDKK IYYNGNTVGY RKSLDFLLGP GQKTAWKMHE 120 YRIHANNPKV QASTYFLINL LYILFIYFKV FL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-28 | 1 | 123 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027067445.1 | 3e-89 | NAC domain-containing protein 2-like | ||||
Refseq | XP_027067446.1 | 3e-89 | NAC domain-containing protein 2-like | ||||
Refseq | XP_027067447.1 | 3e-89 | NAC domain-containing protein 2-like | ||||
Refseq | XP_027067448.1 | 3e-89 | NAC domain-containing protein 2-like | ||||
Refseq | XP_027067451.1 | 3e-89 | NAC domain-containing protein 2-like | ||||
TrEMBL | A0A068VKP1 | 1e-110 | A0A068VKP1_COFCA; Uncharacterized protein | ||||
STRING | EOY09270 | 2e-36 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36160.1 | 9e-31 | NAC domain containing protein 76 |